PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030830-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 769aa    MW: 82695.6 Da    PI: 8.5359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030830-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13395458148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT................TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg................kgRtlkqcksrwqkyl 48 
                       rg WT+eEd +l+ +++q+G+++W++I++                   + R++k+c++rw +yl
  BGIOSGA030830-PA 395 RGQWTPEEDNKLLSYITQYGTRNWRLIPKNAArvrrsdrgvccwnvgrLQRCGKSCRLRWTNYL 458
                       89************************************************************97 PP
2Myb_DNA-binding43.85.9e-14465507246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T  E++ +++++   G++ W+ Ia+ ++ gRt++++k++w++
  BGIOSGA030830-PA 465 GEFTDAEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 507
                       789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF014909.9E-6430293IPR013057Amino acid transporter, transmembrane domain
PROSITE profilePS5129415.087390458IPR017930Myb domain
SuperFamilySSF466893.48E-25392505IPR009057Homeodomain-like
SMARTSM007175.8E-11394460IPR001005SANT/Myb domain
PfamPF002491.3E-11395458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-22396465IPR009057Homeodomain-like
CDDcd001671.47E-9398458No hitNo description
PROSITE profilePS5129424.905459513IPR017930Myb domain
SMARTSM007172.8E-14463511IPR001005SANT/Myb domain
PfamPF002491.8E-12465507IPR001005SANT/Myb domain
CDDcd001675.03E-10466509No hitNo description
Gene3DG3DSA:1.10.10.605.6E-24466513IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MAVHHSLEVA AAGGDGGGGR CYDDDGHPAR TGTVWTCVAH IITAVIGSGV LSLAWSVAKL  60
GWVGGPACMA CFALVTYVSA ALLSDCYRRG DDDKGPRSRS YMDAVRAFLG KKHTWACGLL  120
QYASLYGCGV AYTITTATSM RAILRSNCYH THGHDAPCKY GGSYYMLMFG AAQLFLSFIP  180
DFHDMAWLSV LAAVMSFSYS FIGLGLGLAN TIANGTIKGS ITGAPTRTPV QKVWHVSQAI  240
GDIAFAYPYS LILLEIQDTL KAPPAENKTM KKASIISIVV TTFFYLCCGC FGYPPSGATP  300
WQPPHRLRLL RALLAHRXXX XXXXXXXXXX XXXXARPLAG AAARARARGR SRGREPIYNT  360
RRGRVSAART QQQRNLDGGD IMGRVPCCEK DNVKRGQWTP EEDNKLLSYI TQYGTRNWRL  420
IPKNAARVRR SDRGVCCWNV GRLQRCGKSC RLRWTNYLRP DLKHGEFTDA EEQTIIKLHS  480
VVGNRWSVIA AQLPGRTDND VKNHWNTKLK KKLSGMGIDP VTHKSFSHLM AEIATTLAPP  540
QVAHLAEAAL GCFKDEMLHL LTKKRPSDFP SPAVHDGAGA GASASALAAP CFPAAPPHHP  600
QADDTIERIK LGLSRAIMSD PSTASAAAAA AAPSAPAEDK PWPPGDMSEG LAGMYATYNP  660
AAHAHAQAQA EFRYDGASAA QGYVLGGDGD QGTSMWSHQS LYSGSSGTEE ARRALPEKGN  720
DSVGSSGGDD DAADDGKDSG KGAASDMSGL FASDCVLWDL PDELTNHMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-293955137108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343353RARARGRSRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.581660.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977232240.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551660.0CR855166.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0124N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635420.10.0transcription factor MYB80
SwissprotQ7XQN10.0MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A0E0KRR50.0A0A0E0KRR5_ORYPU; Uncharacterized protein
STRINGOPUNC04G13560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-102myb domain protein 103