PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030484-PA
Common NameOsI_30809
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 382aa    MW: 40023 Da    PI: 7.5523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030484-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05185204120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C  C+k+F+r  n++ H+
  BGIOSGA030484-PA 185 FSCAVCNKTFNRFNNMQMHM 204
                       89*****************9 PP
2zf-C2H213.60.0002276298123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C  Cgk+F  + + ++H +++
  BGIOSGA030484-PA 276 YACRRCGKRFAVRGDWRTHEKNC 298
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-5180206No hitNo description
PROSITE profilePS5015710.055185212IPR007087Zinc finger, C2H2
SMARTSM003550.64185207IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SMARTSM00355230239271IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.35E-6262296No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6262296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558276296IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MHPHLYQSHH HHQHVAPPTK HGGGEEDDQS MLLLSLWPPG HSSHHHQHHH HGAASSSACS  60
SASISAAAVA DAHSGGGGGG HGAAAAASSW FNPSHYHGGS GGGGGFLFQE QQEPNVSISL  120
SIAPPCGVSG GNAAAMAAAG SFATSPLPQQ PVASSAVATA AGGGQAPSQY WIPSAAEILV  180
GSTQFSCAVC NKTFNRFNNM QMHMWGHGSQ YRKGSESLRG AITVGGAAPP ASLMRLPCYC  240
CAEGCRNNVE HPRARPLKDF RTLQTHYRRK HGARPYACRR CGKRFAVRGD WRTHEKNCGK  300
LWFCVCGSDF KHKRSLKDHV RSFGGGHAPH IVESSSTGAG GGGGCGGAGA DDDDDEYYDD  360
DDDTVSLSRA TSAHDDADMI VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876264.10.0zinc finger protein WIP6
TrEMBLA2YZM90.0A2YZM9_ORYSI; Uncharacterized protein
STRINGONIVA08G08420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.19e-96C2H2-like zinc finger protein