PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029777-PA
Common NameOsI_31335
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 363aa    MW: 37748 Da    PI: 5.9369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029777-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14108154354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  BGIOSGA029777-PA 108 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 154
                       78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-13108157No hitNo description
SuperFamilySSF474591.57E-14109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-6217264No hitNo description
SuperFamilySSF550216.41E-5217264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWEGGSHDAA AQLLPWFVGE PAAAAVGGYG GCVDVVGQGG VFGFGFEAAA APVVTRQQRG  60
GAAAAEGSSR GGGGKPAVVS GLLGSLQAEL GRVTAREIMD AKALAASRSH SEAERRRRQR  120
INGHLARLRS LLPNTTKTDK ASLLAEVIEH VKELKRQTTA IAAAAAAGDY HGNDEDDDDA  180
VVGRRSAAAQ QLLPTEADEL AVDAAVDAEG RLVVRASLCC EDRPDLIPDI ARALAALRLR  240
ARRAEITTLG GRVRSVLLIT ADEQQQQHCD DVDDDEDGHR LLLRHGIDGA GAAAGDDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMHYGVHEQ  360
CSV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1000990.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976094610.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.10.0transcription factor bHLH30
TrEMBLA2Z1620.0A2Z162_ORYSI; Uncharacterized protein
STRINGONIVA09G09550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-39bHLH family protein