PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA029774-PA | ||||||||
Common Name | OsI_31340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 31511.9 Da PI: 5.9538 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.4 | 3.7e-46 | 23 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.......kvkaeekew..yfFskrdkkyatgkrknratksgy 82 lppGfrF+Ptd elv +yL++k+++ ++ +i+++d+y++ePwdL p + ++ee+e yfF++r+ + ++g+r+nrat++gy BGIOSGA029774-PA 23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlpPPrcdaaaeE-EEEEEERcgYFFCTRSFRWPSGTRTNRATAAGY 113 79*************************999.78**************642257765431.112222258************************ PP NAM 83 Wkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkdk+vl+ +g+ vg+kktLvfy+grap+gekt+Wvmheyrl BGIOSGA029774-PA 114 WKSTGKDKAVLHGggggGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 163 ************988877888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-52 | 14 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.231 | 23 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-27 | 24 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL 60 YRAEPWDLLP PPRCDAAAEE EEEEEERCGY FFCTRSFRWP SGTRTNRATA AGYWKSTGKD 120 KAVLHGGGGG GGRPVGVKKT LVFYRGRAPR GEKTSWVMHE YRLLHGGAAA TASSSPTPTT 180 VVARSEWVIC RVFVRKTPDG NNDRGTTEHH LPSDDAHLRS SPAPANSVDG AGHASCSFFS 240 GANESMAPSD HFNIGDDMIL HGHDEEELLM MNCSSAFDLP ELLDYESFSL DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-41 | 23 | 197 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51884 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115479120 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064191 | 0.0 | AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611185.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 4e-53 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
Swissprot | Q9SQQ6 | 7e-53 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A2Z167 | 0.0 | A2Z167_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM09G10370.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15352 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 7e-52 | NAC domain containing protein 58 |