PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029518-PA
Common NameOsI_31883
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 702aa    MW: 77170.1 Da    PI: 4.5407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029518-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1454.2e-45111432128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++L   +++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd+++
  BGIOSGA029518-PA  11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLCerSALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSI 101
                       8*********************9999555..6**************6334788899************************************* PP

               NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++       +g++vg kktLv+++grap+ge+tdWvmhey+l
  BGIOSGA029518-PA 102 CNGggggaaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 143
                       **98877777777***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-517166IPR003441NAC domain
PROSITE profilePS5100550.52810166IPR003441NAC domain
PfamPF023653.6E-2411143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLCERSAL  60
RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNGGGGGAA SGRAVGSKKT  120
LVYHHGRAPR GERTDWVMHE YTLLADALPP AARDREAYAL YKLFHKSGAG PKNGEQYGAP  180
FREEDWLDDD DHHHDQLPAE AALPAPATTS GRAATTEEHA DFELPGGDLD VLLAQIENDQ  240
DIIEAQLDFS THVTSQVQIQ HRVHQGWLSD DGGKSDVADA TTSGSALLMA ENTCAELPID  300
GLEQLLMQIS DDQQTVEMLS GFSASVPQSQ LQHDDHQGCL GVHREEVGVA DSTTVSSAVV  360
TEECTVRELQ DIEGLLMQIE NDQENAESLP DFSTPVHLHD CHQAAFGDFQ GSQRATFNIA  420
NLSTMVQESP NFDLQTGPSN QITESILTTE PMNGETNAVE ETSPLRSMSV LGSYDRQDGD  480
DEFLEINDFF DPEDLEQILG STTSQNLIPA DDGVFDSLQY SDAPMFLPGS FDTTGVVAEN  540
HYVEFGASGI QNQGFQHTTE LWAHNQVALN VRNHMKDNHV VFSHSSDATI IHTVNEQPPN  600
RSSNASQSWF NGALSALLDS VPSSPAMAAE NIGLNRTLQR ISSFRSQQPA REEVSSTLIN  660
TRRRGGGLIF ISLMVLLVAI MWTFSNGSAV KLSKGLWKFP ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-42814313140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.878660.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329844460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0NAC domain-containing protein 17 isoform X1
TrEMBLB8BD320.0B8BD32_ORYSI; Uncharacterized protein
STRINGONIVA09G15620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.13e-61NAC domain containing protein 16