PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA029415-PA | ||||||||
Common Name | CBF3, DREB1A, ERF24, OsI_031032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25404.1 Da PI: 4.8493 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 49 | 99 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ + grWv+e+r+p g + r +lg+f+tae+Aa+a++aa++++ BGIOSGA029415-PA 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99 579******************9...6445**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 49 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-15 | 50 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-24 | 50 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.664 | 50 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-13 | 50 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-5 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.66E-17 | 51 | 117 | No hit | No description |
PRINTS | PR00367 | 6.6E-5 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA 60 GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL 120 LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DEEESAATDG 180 DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58262 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF494422 | 0.0 | AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds. | |||
GenBank | JN561151 | 0.0 | JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610912.1 | 1e-172 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | A2Z389 | 1e-174 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | G9I217 | 1e-171 | G9I217_ORYSI; DREB1A | ||||
TrEMBL | I6TKJ0 | 1e-171 | I6TKJ0_ORYSA; DRE-binding factor 1A | ||||
STRING | OGLUM09G17430.1 | 1e-171 | (Oryza glumipatula) | ||||
STRING | ORUFI09G18210.1 | 1e-171 | (Oryza rufipogon) | ||||
STRING | OS09T0522200-01 | 1e-171 | (Oryza sativa) | ||||
STRING | ONIVA09G17900.1 | 1e-171 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-35 | C-repeat/DRE binding factor 2 |