PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029405-PA
Common NameOsI_32106
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 815aa    MW: 85230 Da    PI: 5.878
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029405-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-21122177156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  BGIOSGA029405-PA 122 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 177
                       688999***********************************************999 PP
2START177.76.9e-563475771205
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++a++elvk a+ +ep+W  s     e +n+de+ + f++  +     + +ea r+sg+ +  +++lv +l+d + +W+e+++    +a+
  BGIOSGA029405-PA 347 ELALAAMDELVKVAQMDEPLWLPSLdggfETLNYDEYHRAFARVVGqcpagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRAS 438
                       5899*************************************8866699******************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEEEEEECT CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgiliepksn 159
                       t++ issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    p +       sss++ ++llp+g++++++ n
  BGIOSGA029405-PA 439 TTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQnggggssSSSYMGCRLLPTGCIVQDMNN 531
                       **********************************************************988877667788889******************** PP

                       CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
             START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                       g+skvtwv h+++++   h+l+r+l++sg+a ga++w+a lqrqc+
  BGIOSGA029405-PA 532 GYSKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQ 577
                       *********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-22104179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-23109179IPR009057Homeodomain-like
PROSITE profilePS5007118.301119179IPR001356Homeobox domain
SMARTSM003891.5E-19120183IPR001356Homeobox domain
PfamPF000465.9E-19122177IPR001356Homeobox domain
CDDcd000869.32E-20122179No hitNo description
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PROSITE profilePS5084841.927338581IPR002913START domain
SuperFamilySSF559617.69E-30342577No hitNo description
PfamPF018523.5E-47347577IPR002913START domain
SMARTSM002343.3E-39347578IPR002913START domain
CDDcd088754.42E-99353577No hitNo description
SuperFamilySSF559619.89E-6681735No hitNo description
SuperFamilySSF559619.89E-6765805No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MSFGGMFDGA GSGVFSYDAG GGGGGGVHNS RLLPTPPVPK PGGGFAAPGL SLGLQTMDGS  60
QLGDVNRSLA MMGNGGSGSG GDGDSLGRGR EEENDSRSGS DNLDGASGDE LDPDNSNPRK  120
KKKRYHRHTP QQIQELEAVF KECPHPDEKQ RMELSRRLNL ESRQVKFWFQ NRRTQMKTQI  180
ERHENALLRQ ENDKLRAENM TIREAMRNPM CASCGGAAVL GEVSLEEQHL RIENARLKDE  240
LDRVCALAGK FLGRPISSIS SPGPPSLQAC SGLELGVGSN GGFGLGALGA SAAMQSIPDL  300
MGGSSGLTGG PVGSAAMRLP AGIGGLDGAM HAAAADGGAI DRAVLLELAL AAMDELVKVA  360
QMDEPLWLPS LDGGFETLNY DEYHRAFARV VGQCPAGYVS EATRESGIAI ISSVDLVDSL  420
MDAPRWSEMF PCVVARASTT DIISSGMGGT RSGSIQLMHA ELQVLSPLVP IREVVFLRFC  480
KQHAEGLWAV VDVSVDAVLR PDQNGGGGSS SSSYMGCRLL PTGCIVQDMN NGYSKVTWVV  540
HAEYDETAAH QLYRPLLRSG QALGARRWLA SLQRQCQYLA ILCSNSLPAR DHAAITPVGR  600
RSMLKLAQRM TDNFCAGVCA SAAQKWRRLD EWRGEGGGGG GGGGGDGEDK VRMMARHSVG  660
APGEPPGVVL SATTSATSGN QNNMLILQET CTDSSGSLVV YAPVDVQSMH VVMNGGDSAY  720
VSLLPSGFAI LPDGHNNGAS PSPAEVGSGA SPNSAAGGGG GSNNTGSLVT VAFQILVNNL  780
PTAKLTVESV DTVSNLLSCT IQKIKSALQA SIISP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.574140.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329819000.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612621.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA2Z3A70.0A2Z3A7_ORYSI; Uncharacterized protein
STRINGOPUNC09G15430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-164HD-ZIP family protein