PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA029280-PA | ||||||||
Common Name | OsI_32370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 173aa MW: 18069.1 Da PI: 9.6546 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H BGIOSGA029280-PA 57 FSCNYCHRKFFSSQALGGHQNAH 79 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.27E-6 | 55 | 84 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MTSGAILYQW RASRRKSTAA STSTCACWRP RRAGVRPTAA RGAAPAAAAA VDPREAFSCN 60 YCHRKFFSSQ ALGGHQNAHK LERTLAKRSR DIVMTAAVSP SPSSSSSSRA VHGFDGVAGG 120 FFWTAPPYGH AAAAEAAEED HDVAPPAPPP ADGGCGGGRY GRNGEEIDLS LKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.101284 | 1e-161 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 86599399 | 1e-161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611461.1 | 2e-91 | zinc finger protein 2 | ||||
TrEMBL | B8BEE2 | 1e-121 | B8BEE2_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM09G20140.1 | 6e-91 | (Oryza glumipatula) | ||||
STRING | ORUFI09G21000.1 | 6e-91 | (Oryza rufipogon) | ||||
STRING | ONIVA09G20570.1 | 6e-91 | (Oryza nivara) | ||||
STRING | ORGLA09G0156300.1 | 6e-91 | (Oryza glaberrima) | ||||
STRING | OBART09G19440.1 | 6e-91 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 4e-18 | zinc finger protein 2 |