PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029106-PA
Common NameOsI_30120
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 320aa    MW: 34482.8 Da    PI: 10.119
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029106-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10178235562
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +  l ++
  BGIOSGA029106-PA 178 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 235
                       899******************************************9999877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-18174238IPR004827Basic-leucine zipper domain
PfamPF077161.8E-9175227IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829176239IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.3E-12178235No hitNo description
SuperFamilySSF579594.57E-12178229No hitNo description
CDDcd147031.65E-22179230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDDPGAADPG ARPHHLSPGQ PPVVPRSPTP LDLSSAAAAA AAASYRRLSP SLRPPAHPQA  60
RLPSPYPQIP SSSSAAAAGS SGHHARSLSQ PLFFSLDSLP PLPLSVDSFI EKLNFDESPK  120
LPLPSPSGGL SRSGSGSLDG GAASLFGAEF ANGEFTEAEK KKIMANERLA EIALTDPKRV  180
KRILANRQSA ARSKERKMRY IQELEHKVQV LQTEATTLSA QLTMLQRDST GLATQNNELK  240
IRLQAMEQQA QLRDALNEAL TAEVQRLKLA TGEITDGRMS KGLQQQMNSQ LIQLQQLQIQ  300
QQQSSQTTQQ GQQQQPQKSA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.159270.0callus| leaf| panicle| root| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4677320.0AF467732.1 Oryza sativa Vsf-1 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660351.11e-117PREDICTED: transcription factor RF2a-like
TrEMBLA2YXP80.0A2YXP8_ORYSI; Uncharacterized protein
STRINGPavir.Fa00090.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-65bZIP family protein