PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029005-PA
Common NameOsI_29886
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 279aa    MW: 30344.4 Da    PI: 5.1392
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029005-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.52e-371262251100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ e
  BGIOSGA029005-PA 126 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCE 218
                       6******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  BGIOSGA029005-PA 219 LARTQAH 225
                       **99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.198125226IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-37126223IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPTEGEERED GSGAGCGVLK HLPNTPTPTL PSPGALPPVN SCTRASCKIC PAAGSTLVIV  60
VFVVIVVESA SAELWCTWYM RSKDSAVSSP NPAKIFGDPA PKISRTMQDP EEEDDDQQQQ  120
HPAARRCAAC RYLRRRCADD CVLAPFFPAS RPHRYACVHR VFGASNVARL LQSLPMAERG  180
NAANTMAMEA YWRVQDPVYG CTGIINRLQE EIRAVQCELA RTQAHLAIDV ASSQQPPPPP  240
PPPPLPSPPP PQQQQQQQEE QSPPPLLDPA DEFLNLDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2812722612111LOB family transfactor Ramosa2.1
5ly0_B1e-2812722612111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.431851e-167stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887341e-167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-173CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8B8W20.0B8B8W2_ORYSI; Uncharacterized protein
STRINGONIVA08G23410.11e-137(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-30LOB domain-containing protein 24