PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028952-PA
Common NameOsI_29790
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 439aa    MW: 46651.2 Da    PI: 6.541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028952-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05268287120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  BGIOSGA028952-PA 268 FSCPVCFKTFNRYNNMQMHM 287
                       89*****************9 PP
2zf-C2H212.50.00046354374323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F  k + ++H +++
  BGIOSGA028952-PA 354 CRKCGKAFAVKGDWRTHEKNC 374
                       *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64268295IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-6268287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
SuperFamilySSF576673.78E-6336372No hitNo description
Gene3DG3DSA:3.30.160.609.3E-5339372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621352372IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAHLPPPL PPPYAALYPT AGGVGVGVGA  60
HHHHQYPPAA FFHPPPVHQQ HQAPPSPPLR EALPLLSLSP TPARRGGVVD AAADSDSDDD  120
DDGDCCYHHL QDQEGAAAGS TDTPAAAAAR APLFADLNCI PTCCGDDNDG GDPMDVEVAG  180
TTADIDAAVA LRIGLPAGGT EADLLSGLTG AGVEHEEEEE DCKVDGGGSG GDDEVVPLGF  240
SSTPIGRLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES  300
LRGVQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA  360
FAVKGDWRTH EKNCGKLWYC LCGSESSTSA PSRTTPAPSA TPTPPSTPTT TTAPSPTPTP  420
SSDLRPPWLP PPCSRRRAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1016140.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875660.0AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649538.10.0zinc finger protein WIP2
TrEMBLB8BC960.0B8BC96_ORYSI; Uncharacterized protein
STRINGOS08T0504000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.17e-98C2H2 family protein