PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028870-PA
Common NameOsI_29653
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 312aa    MW: 34461.6 Da    PI: 10.6442
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028870-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.11.1e-08531102686
          trihelix  26 lkkplWe.evskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       + + +W  +v++++++ g   ++  +qC++k+e+l+kry+ + ++         s +pyf+++e
  BGIOSGA028870-PA  53 SSGRRWPpHVAARCAASGAalRKHGQQCRHKLEQLRKRYRIEGARPVT------SLWPYFRRME 110
                       55666743799999777654499****************988776664......68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-761111No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAQTRSGAR DHAAGRNGRR RLSHPPRPPP RALSSTLRGT VDEAAPGASS RRSSGRRWPP  60
HVAARCAASG AALRKHGQQC RHKLEQLRKR YRIEGARPVT SLWPYFRRME RFERGPLPVS  120
SAFPPPPPAA SPPAAASDDD DDDEEDDEEE EEVEEPIPRN NTRSINGILR DSGGGGGGFS  180
GFAPRPPPQQ PPPSFAMLST APPRKRVPYE AFQAKVAMAD KVKEEEPPPV ATRPGGGTNE  240
QLSAVLRDFG QGIMRLERRR MEMQWEIDRG WKETEARHNR MLLDAQRHLH EALAATPPPL  300
KKARREHGGD GS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.60160.0callus| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160138840.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648379.11e-112trihelix transcription factor ASIL2
TrEMBLA2YWE10.0A2YWE1_ORYSI; Uncharacterized protein
STRINGORUFI08G20750.11e-112(Oryza rufipogon)
STRINGOS08T0484700-011e-112(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-07Trihelix family protein