PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA028630-PA | ||||||||
Common Name | OsI_29160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 453aa MW: 48316 Da PI: 4.421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.1 | 3.4e-39 | 84 | 182 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle ae BGIOSGA028630-PA 84 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAE 176 7******************************************************************************************** PP DUF260 94 lallke 99 l+++ + BGIOSGA028630-PA 177 LNTVLH 182 *98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.017 | 83 | 184 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 84 | 180 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MTSTTTTNTT TTTTNNNNNP VSTTTTTTAS HQRQSLPVAA RPPHSSGSGS GSGGSHRGAS 60 GGGSGGGGGG GGGGGGGGGG TNQACAACKY QRRKCNPDCP MAPYFPADQQ RRFLNAHRLF 120 GVSNILKTLR HLKPELCDDA MRTLIYQAEM RAHDPVGGCC RVICDLERQL ELDTAELNTV 180 LHHLAMCRQA AAAGASGSVA ATLPAGVLDD ACADLDVTSS NQPLLLSAEH EVVDALYANQ 240 EADAAILHAD GHHNQDESQR EHHHGQPQQL YDYFYYDSTA GDDVSSKPNL DINVDGMQHF 300 DFDTNYDAEH KVELTSDHQM PVGVDEHNQI DDKGFEIKSG PSLVDVFDLR QEEEQVQTVD 360 VNTDIEVKEM VDMNADIDVK TMVDENSNID IIKTMVDVNA DIVDVVKTVV DVNGDIGVKE 420 ELPELENGKI IAGDATQMAE SSHCILGLGV SSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 80 | 204 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 80 | 204 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 80 | SGGGGGGGGGGGGGGGGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.71537 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116013602 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883262.1 | 0.0 | uncharacterized protein LOC9266602 | ||||
TrEMBL | A2YV11 | 0.0 | A2YV11_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA08G14880.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-37 | LOB domain-containing protein 22 |