PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA028509-PA | ||||||||
Common Name | OsI_28906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 112aa MW: 12275.9 Da PI: 10.4508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44 | 5e-14 | 34 | 63 | 1 | 31 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkt 31 kprlrWt +LH+rFv+av+qLGG++ +tP+ BGIOSGA028509-PA 34 KPRLRWTADLHDRFVDAVAQLGGPD-TTPRV 63 79**********************9.78864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-12 | 31 | 61 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-9 | 34 | 62 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDTT 60 PRVSSLTEGI HGVALENRPH SGRYPCLVAS KSEEIWGHWL KRRRPQWVSR TK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15464 | 1e-49 | callus| flower| leaf| panicle| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059644 | 1e-92 | AK059644.1 Oryza sativa Japonica Group cDNA clone:001-031-B12, full insert sequence. | |||
GenBank | AK062928 | 1e-92 | AK062928.1 Oryza sativa Japonica Group cDNA clone:001-109-A04, full insert sequence. | |||
GenBank | AK103873 | 1e-92 | AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence. | |||
GenBank | AP004396 | 1e-92 | AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10. | |||
GenBank | AP004459 | 1e-92 | AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11. | |||
GenBank | AP014964 | 1e-92 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT834232 | 1e-92 | CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650961.1 | 2e-22 | protein PHR1-LIKE 3 | ||||
Swissprot | Q8LAJ7 | 1e-15 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | B8B9Z6 | 2e-75 | B8B9Z6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA09G02600.1 | 7e-33 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.2 | 3e-15 | G2-like family protein |
Publications ? help Back to Top | |||
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