PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028421-PA
Common NameOsI_28710
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 794aa    MW: 87942.3 Da    PI: 9.5006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028421-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000462446123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ Cg+sFs+   L  H  +H
  BGIOSGA028421-PA 24 FKCSVCGRSFSSYQALGGHKTSH 46
                      89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-52351No hitNo description
SMARTSM003550.00812446IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-112447IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.782451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
PfamPF134565.1E-28194313No hitNo description
CDDcd062225.59E-27195312No hitNo description
SuperFamilySSF530981.67E-9195315IPR012337Ribonuclease H-like domain
PfamPF142142.0E-43526692IPR025476Helitron helicase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MLALGGHHRV QAPPPLSAPV GAEFKCSVCG RSFSSYQALG GHKTSHRFKL PTLPASPVLA  60
SASSELQSPL AFSPRAWRPQ DEPPGQAADS ARSSGNGHSA ARAFDLNLPA GAILMNPEFV  120
STLKAGVGPI FRVALWWLPL VIVVVQLSPS VRLSARWPHP TRLPIVALVE RLPSASPSAL  180
DGCLHPRFSS QTGQGAFSRN DSQGTTGAVL RDVDGRFKGG RARWHPHGLD ALMMEALACR  240
DGIQLAREKG VLRIQVETDC QELTKLWKQG GSQRSHVASI ISDAIELSSG FHGFTLLYTP  300
RSCNHVAHVL AKQVTADDRL ASSRPSTPKP ARKRRQPERA FIPSGNIPSD GVVLLADDAL  360
SHVGDFPTSF HLPSRRSIRR RLLAQSAGFP HPDPITAAQS CRKRKLSMAA KSSRDHSYSM  420
MLDLLFDSLM TARDRLAENG DDRYIIRLFG DPDKHGDIFS APVASELAWD QAGHLQKVEE  480
KHCKFMSMQY PILFPYGEDG YHENITYRRC ARSQAIKRKK ATMVEYFAYR LHDRADDFNT  540
PMRCKRGTQA YVIDAYCCME ESRLSHYRSK TFQLKYRTAS FSEVSTMVHS GITEASDAGQ  600
RVILPSSYIG GPRYLYQNYL DSVALCRKYG CPNLFITFTS NSLWSEVTQA LAIIPGQHSA  660
DRPDIINRVF HVKLHLFMDD IVKKKFFGPV TAEHLSSMGQ DAAYHLNHAT LGINSSAPSV  720
IQYVKSYVLS EIDSILRNVG RTLAYFHLPE PTIQSTSILG NRLLIDEQAY DLEKISIEAA  780
DQLGKLNLNQ RHIL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.502320.0flower| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329802200.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090790.0AP009079.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0031E03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8B9I30.0B8B9I3_ORYSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.18e-09zinc-finger protein 1