PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA027877-PA | ||||||||
Common Name | OsI_27583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 402aa MW: 43814.2 Da PI: 9.6115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 5.8e-49 | 31 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v++ BGIOSGA027877-PA 31 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKV 122 79***************************.89***************888889**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +glkktLvfy g+apkg +++W+m+eyrl BGIOSGA027877-PA 123 EGDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 156 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-56 | 30 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 30 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 32 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MRGSDHHQDV VAAPRGGGGG GDDGQAHDMV MPGFRFHPTE EELIEFYLRR KVEGKRFNIE 60 LIAFVDLYRY DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV 120 KVEGDRPIGL KKTLVFYVGK APKGLRSSWI MNEYRLPHGD ADRYQKEISL CRVYKRPGIE 180 DNFHLTGTTT KSSGSKAAAA MGKKHAAANR TSSTAAAAAP RLAPMFDGGG GHHSSALMGK 240 ATYNASHAAA EGTNAIAMSL SAAAALHPPA PAMFRSTASV ASLSSTTSTE EDGTSLFHLK 300 AGATTTNTTT MHHHHHHQQL PASTHALLNT NSSAMATIPI DELSRAIGSY SNNHHQPNST 360 TTHQSTALPP SQQSPLLPFA SMEKIWDWNP LLESPKVCTN FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.28424 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978411 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071052 | 0.0 | AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence. | |||
GenBank | AK072275 | 0.0 | AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659059.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | B8BA63 | 0.0 | B8BA63_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM08G01070.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OBART08G01010.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 5e-97 | NAC domain containing protein 35 |