PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027623-PA
Common NameOsI_27885
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 738aa    MW: 81703.8 Da    PI: 4.3944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027623-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-5291421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp GfrFhPtdeelv +yLk k++g+  ++++vi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ 
  BGIOSGA027623-PA   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEADVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRV 101
                       699************************9999****************96446677888*********************************** PP

               NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + sk    k++++g+kktLvf++grapkge+t W+mheyr 
  BGIOSGA027623-PA 102 IRSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                       ***988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-593163IPR003441NAC domain
PROSITE profilePS5100557.5329163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAD VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TPLLPYDSTD QDVLSMDSGA ESLQDLFNSM  420
DDSNARNNVW GNEPFLQGTG FPMRLMLQLS ESLSPDFDAS MTRDECEDEE PGIVVTSKYV  480
NEAPEESTAE KDMPSDGDDA EPTGITILRR RHAPTASSFS DGDDAESTGI TILRQHQAPN  540
ASLLSDGDDA ESTGITILRR RQAPTASSAS SFTQQGAAVQ RVRLQSNLDA APCSSVDGSS  600
SCIINEGESE RTMEKPEIEE NAGSTLAEGG TCHEDDQKEH DASAANAKSV LRLRKTAEGS  660
DKENKQEEEE GVLDSHMLVA TYPSCSAVVS QDTLKERVER KLKKASCKRE DGHLLPSGLW  720
AKADFDLLEN DFKGWFGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45916417166NO APICAL MERISTEM PROTEIN
1ut4_B3e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_A3e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_B3e-45916417166NO APICAL MERISTEM PROTEIN
4dul_A3e-45916417166NAC domain-containing protein 19
4dul_B3e-45916417166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87870.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166331640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8469940.0EU846994.1 Oryza sativa Japonica Group clone KCS281G09 NAC2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLB8BAW70.0B8BAW7_ORYSI; Uncharacterized protein
STRINGONIVA08G03440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.24e-69NAC 014