PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA027481-PA | ||||||||
Common Name | OsI_28180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 31666 Da PI: 8.5858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.1 | 8.6e-50 | 6 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhP+d+elv +yL +k+++ +i +vd++k+ePwdLp ++ + kewyfFs rd+kyatg+r+nrat+sgyW BGIOSGA027481-PA 6 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYW 95 79********************99888555541...1455546***************7666789**************************** PP NAM 84 katgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129 katgkd++++++ + vg++ktLvfy+grapkg+kt+Wvmhe+rle BGIOSGA027481-PA 96 KATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 153 ***********86666550..155566666***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-55 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.995 | 6 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-26 | 7 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVEARMPPGF RFHPRDDELV LDYLLHKLAA GGRGGGVYGG GGGVAIVDVD LNKCEPWDLP 60 DAACVGGKEW YFFSLRDRKY ATGHRTNRAT RSGYWKATGK DRSITRRSSI SSGEPSSSAA 120 AAAVGMRKTL VFYRGRAPKG RKTEWVMHEF RLEPQPLHLK EDWVLCRVFY KTRQTIPSPS 180 SEEAVTLPNE LDLPATPSLP PLIDAYIAFD SAPTTTPSMV GSYEQVSCFS GLPALPMKGS 240 ISFGDLLAMD TSAEKKAIRV LHNSNTAKLE LSPDWGQESG LSQMWNPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26957 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990805 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120197 | 0.0 | AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648318.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 5e-78 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0I891 | 0.0 | A0A0E0I891_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QFI7 | 0.0 | A0A0E0QFI7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YS82 | 0.0 | A2YS82_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3BQJ7 | 0.0 | A3BQJ7_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI08G06500.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA08G05790.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 8e-76 | NAC domain containing protein 1 |