PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027481-PA
Common NameOsI_28180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 288aa    MW: 31666 Da    PI: 8.5858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027481-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.6e-5061531129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                       +ppGfrFhP+d+elv +yL +k+++                 +i +vd++k+ePwdLp ++  + kewyfFs rd+kyatg+r+nrat+sgyW
  BGIOSGA027481-PA   6 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYW 95 
                       79********************99888555541...1455546***************7666789**************************** PP

               NAM  84 katgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129
                       katgkd++++++      +           vg++ktLvfy+grapkg+kt+Wvmhe+rle
  BGIOSGA027481-PA  96 KATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 153
                       ***********86666550..155566666***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-553171IPR003441NAC domain
PROSITE profilePS5100552.9956171IPR003441NAC domain
PfamPF023654.3E-267152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVEARMPPGF RFHPRDDELV LDYLLHKLAA GGRGGGVYGG GGGVAIVDVD LNKCEPWDLP  60
DAACVGGKEW YFFSLRDRKY ATGHRTNRAT RSGYWKATGK DRSITRRSSI SSGEPSSSAA  120
AAAVGMRKTL VFYRGRAPKG RKTEWVMHEF RLEPQPLHLK EDWVLCRVFY KTRQTIPSPS  180
SEEAVTLPNE LDLPATPSLP PLIDAYIAFD SAPTTTPSMV GSYEQVSCFS GLPALPMKGS  240
ISFGDLLAMD TSAEKKAIRV LHNSNTAKLE LSPDWGQESG LSQMWNPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-43117115168NAC domain-containing protein 19
3swm_B2e-43117115168NAC domain-containing protein 19
3swm_C2e-43117115168NAC domain-containing protein 19
3swm_D2e-43117115168NAC domain-containing protein 19
3swp_A2e-43117115168NAC domain-containing protein 19
3swp_B2e-43117115168NAC domain-containing protein 19
3swp_C2e-43117115168NAC domain-containing protein 19
3swp_D2e-43117115168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.269570.0flower| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329908050.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648318.10.0NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE65e-78NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0I8910.0A0A0E0I891_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QFI70.0A0A0E0QFI7_ORYRU; Uncharacterized protein
TrEMBLA2YS820.0A2YS82_ORYSI; Uncharacterized protein
TrEMBLA3BQJ70.0A3BQJ7_ORYSJ; Uncharacterized protein
STRINGORUFI08G06500.10.0(Oryza rufipogon)
STRINGONIVA08G05790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.28e-76NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]