PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027463-PA
Common NameOsI_28222
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 399aa    MW: 44897.8 Da    PI: 4.5296
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027463-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC151.41.7e-472283311101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifd
  BGIOSGA027463-PA 228 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFD 320
                       89******9777799****************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdi+  d++
  BGIOSGA027463-PA 321 FLVDIITDDKM 331
                       ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR008295.7E-54762IPR005795Major pollen allergen Lol pI
SuperFamilySSF495901.83E-950100IPR007117Expansin, cellulose-binding-like domain
Gene3DG3DSA:2.60.40.7601.3E-1151100IPR007117Expansin, cellulose-binding-like domain
PfamPF013572.6E-95199IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS508439.4365699IPR007117Expansin, cellulose-binding-like domain
PRINTSPR008295.7E-56378IPR005795Major pollen allergen Lol pI
SuperFamilySSF471136.71E-29208322IPR009072Histone-fold
PfamPF008081.5E-18250312IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-32251326IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019953Biological Processsexual reproduction
GO:0005576Cellular Componentextracellular region
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARTPAARPA DDEDDKLRTR RLCTQERGGA TPFFYINIET VIITNMNYYP EGSNPVYFAV  60
LVKYEDLDGD VVQVDLMESK SAYGGAIEVW TPMRESWGSA SAATPARPFV TNNLCGVLGG  120
VLAMEMVIVL RTQEAYVQIL QQLHRSTSLE MDPHSHKKAH EGLIGDNPDA YAVTTYQPVL  180
MVEPSAAAAF PPAPQVAPAY PVNPMQLPEH QQHAIQQVQQ LQQQQKEQLQ AFWADQMAEV  240
EQMTEFKLPN LPLARIKKIM KADEDVKMIA GEAPALFAKA CEMFILDMTL RSWQHTEEGR  300
RRTLQRSDVE AVIKKTDIFD FLVDIITDDK MKDDGMGSQA ASMVSPYTSG GMGFSFDLYP  360
NQHHLAYMWP PQEQQEQWPP QEQQEQKQKQ DSDGGGQDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-40236326393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300306RRTLQRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180520.0callus
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038750.0AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649457.10.0nuclear transcription factor Y subunit C-4-like
SwissprotQ655V52e-55NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLB8BBZ80.0B8BBZ8_ORYSI; Uncharacterized protein
STRINGOGLUM08G06520.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-49nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]