PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA027072-PA | ||||||||
Common Name | OsI_29022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 586aa MW: 64396.8 Da PI: 8.5343 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 37 | 6.8e-12 | 171 | 209 | 3 | 42 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k +C+Ck skClk+YCeCf++g++C C+C++C+N+ ++ BGIOSGA027072-PA 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209 789************************.********9875 PP | |||||||
2 | TCR | 47.4 | 4e-15 | 252 | 292 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++ BGIOSGA027072-PA 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292 589***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-7 | 169 | 209 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 33.493 | 170 | 292 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.8E-8 | 172 | 206 | IPR005172 | CRC domain |
SMART | SM01114 | 7.4E-16 | 252 | 293 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-11 | 255 | 290 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAAFLHALGP PRTPPCYQLP LAKVNSSLPL 60 WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP 120 QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK 180 CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC 240 ESKAAEGDIV GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK 300 NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASAL SCSLTSSVTR EDAKSLVKYV 360 PHEVTYRPSL ADIIQIEDVN ELCNLLILVS RQAGATLLES GMKENTKRKK LNRVDSCLSS 420 TNHDREAIQK EPAKQMCSLE KSSNEVLIAE GRLELPRADP FDIQKGNKRP LSPGTQALMC 480 DEQDAVFQDS KAPDATPSTT EENLVDIFKE QEKRVLTNFR DYLCKLATCG KLQELKLSLA 540 STNCSEQAFA DHGNNSSITR VAKVTRIRQT IPQFSSKAAS TTALDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-25 | 174 | 296 | 14 | 127 | Protein lin-54 homolog |
5fd3_B | 2e-25 | 174 | 296 | 14 | 127 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53233 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981516 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071493 | 0.0 | AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650564.1 | 0.0 | protein tesmin/TSO1-like CXC 6 isoform X2 | ||||
TrEMBL | B8BA95 | 0.0 | B8BA95_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM08G13570.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13846 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.2 | 2e-62 | Tesmin/TSO1-like CXC domain-containing protein |