PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026931-PA
Common NameOsI_29347
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 298aa    MW: 32309.2 Da    PI: 6.1354
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026931-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25.2e-302376255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      +rlrWt +LHerFv av++LGG+++AtPk++l++m v+gLtl+h+kSHLQkYR 
  BGIOSGA026931-PA 23 ARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRQ 76
                      7****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.06E-152178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-292180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-212376IPR006447Myb domain, plants
PfamPF002491.3E-52475IPR001005SANT/Myb domain
PfamPF143793.5E-14140180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSSQQQQQHA GEAPASAAAA ARARLRWTGQ LHERFVLAVA ELGGADRATP KSVLRAMAVP  60
GLTLYHLKSH LQKYRQAVSR GGNGGGGGSG SLNDRSSSSE RQPADHDGDS AADEPRTIAY  120
DGDSDGDAKE ALRDSSRSMV QMQREVQRKL QEQIEVKRHL QLRMEAQGRY LQSVLRRAQQ  180
VLADHSLASS PEAATTELSE LASAVDIECM SSSSPPRHHR QSAATDSCVT TTSSSEAESK  240
AAGSKRLHTS DCTVEQPVQG KRTFNFLQRH TQADQEEEQE EEYAGAEDGS SSEIDLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-182277156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-182277156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-182277156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-182277156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.491230.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329803620.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703380.0AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.10.0myb-related protein 2
TrEMBLB8BB140.0B8BB14_ORYSI; Uncharacterized protein
STRINGORGLA08G0138500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.35e-47G2-like family protein