PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026511-PA
Common NameOsI_30218
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 161aa    MW: 16804.7 Da    PI: 9.5308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026511-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000136082123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C ++F ++  L  H++ H
  BGIOSGA026511-PA 60 FSCTYCRRRFYSSQALGGHQNAH 82
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-65787No hitNo description
PROSITE profilePS5015711.0326087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEKEIISARS TTTTTTTTAA AGDVNLDLRL VHSTAAGRQH TAATRNPAPP LAAAGDDRAF  60
SCTYCRRRFY SSQALGGHQN AHKLERSLAK RSRELSAGVT TAAAPPPPHP ELGWAYPPQG  120
GGGAAAAVVS WIADGGRRYG YRVHAVAAGG DAEDIDLSLK L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.159760.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648530.14e-82zinc finger protein 2
TrEMBLA2YY031e-112A2YY03_ORYSI; Uncharacterized protein
STRINGONIVA08G26310.19e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-18zinc finger protein 2