PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026430-PA
Common NameOsI_27405
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 298aa    MW: 33440.6 Da    PI: 5.7254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026430-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  BGIOSGA026430-PA 19 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLKRTGKSCRLRWLNYL 66
                      89********************************************97 PP

2Myb_DNA-binding52.89.3e-1772115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  BGIOSGA026430-PA  72 RGNMTAEEQLLILELHGRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                       89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6681466IPR017930Myb domain
SuperFamilySSF466896.74E-3117113IPR009057Homeodomain-like
SMARTSM007173.3E-161868IPR001005SANT/Myb domain
PfamPF002494.7E-171966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-232073IPR009057Homeodomain-like
CDDcd001671.17E-122166No hitNo description
PROSITE profilePS5129423.7567121IPR017930Myb domain
SMARTSM007174.8E-1571119IPR001005SANT/Myb domain
PfamPF002492.0E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2274120IPR009057Homeodomain-like
CDDcd001678.06E-1274115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAREVSSEEE AGGGDELRRG PWTVEEDLLL VNYIAAHGEG RWNALARCAG LKRTGKSCRL  60
RWLNYLRPDV RRGNMTAEEQ LLILELHGRW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKH  120
AKHLNCDVNS QQFKDLMRYL WMPRLLERIH RSSQSQSHDA DDADLSVSAA TSCITSDLVV  180
DAHHPPLAMA DSNDSAAMWQ QHQAPQMSVA GAPPPTTTMA QHVVLPTAAA SCHQMQDQFV  240
CARAAETTTC CWSESESLPG LAGLYYDDAA AALPEFDVET MAMWGPEDDP WYTQMLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251611924126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.326340.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034550.0AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645266.10.0transcription factor JAMYB-like
TrEMBLA0A0E0I5Y10.0A0A0E0I5Y1_ORYNI; Uncharacterized protein
TrEMBLA2YQ450.0A2YQ45_ORYSI; Uncharacterized protein
TrEMBLQ0D3F90.0Q0D3F9_ORYSJ; MYB transcription factor
TrEMBLQ8H5F50.0Q8H5F5_ORYSJ; Putative typical P-type R2R3 Myb protein
STRINGOS07T0688200-010.0(Oryza sativa)
STRINGONIVA07G26740.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.16e-81myb domain protein 112