PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA026430-PA | ||||||||
Common Name | OsI_27405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33440.6 Da PI: 5.7254 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl BGIOSGA026430-PA 19 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLKRTGKSCRLRWLNYL 66 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ BGIOSGA026430-PA 72 RGNMTAEEQLLILELHGRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.668 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-16 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-12 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 23.75 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 74 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.06E-12 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAREVSSEEE AGGGDELRRG PWTVEEDLLL VNYIAAHGEG RWNALARCAG LKRTGKSCRL 60 RWLNYLRPDV RRGNMTAEEQ LLILELHGRW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKH 120 AKHLNCDVNS QQFKDLMRYL WMPRLLERIH RSSQSQSHDA DDADLSVSAA TSCITSDLVV 180 DAHHPPLAMA DSNDSAAMWQ QHQAPQMSVA GAPPPTTTMA QHVVLPTAAA SCHQMQDQFV 240 CARAAETTTC CWSESESLPG LAGLYYDDAA AALPEFDVET MAMWGPEDDP WYTQMLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-25 | 16 | 119 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32634 | 0.0 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988664 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103455 | 0.0 | AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645266.1 | 0.0 | transcription factor JAMYB-like | ||||
TrEMBL | A0A0E0I5Y1 | 0.0 | A0A0E0I5Y1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YQ45 | 0.0 | A2YQ45_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q0D3F9 | 0.0 | Q0D3F9_ORYSJ; MYB transcription factor | ||||
TrEMBL | Q8H5F5 | 0.0 | Q8H5F5_ORYSJ; Putative typical P-type R2R3 Myb protein | ||||
STRING | OS07T0688200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G26740.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 6e-81 | myb domain protein 112 |