PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026216-PA
Common NameOsI_27013
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 362aa    MW: 38829.6 Da    PI: 4.6858
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026216-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.59.7e-3483182297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                       lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife
  BGIOSGA026216-PA  83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFE 175
                       79************************99877778***************************************8889**************** PP

            DUF573  91 lskkiWg 97 
                       +++ iW+
  BGIOSGA026216-PA 176 IARNIWR 182
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-3084181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLPAGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMATPAA  60
AGGGSGSVGG VGSSSGGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRGRLQ LGFSKSQLVE KLRRLKRKYR NCVSRLRGSG SAFSFRSPHE QAIFEIARNI  180
WRPTNKHGRD GDSDDEDATQ VTPAPVPVNT SPNDFAATAP AAAPATTNMV QPIQPVQVPV  240
SVPVKMDDTP PALSQTTMPI TVTMEGSEPL RLPVMPPQPA VLDADKSCLT PLFKEMVRAV  300
INIGSNPFGA QLSEPPHGLP MEGEKWRKQR ILELEVYLKR IELLQDQVKA TLEELKSSAP  360
GT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526220.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783740.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLB8B5550.0B8B555_ORYSI; Uncharacterized protein
STRINGOBART07G23470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.19e-45DNA-binding storekeeper protein-related transcriptional regulator