PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA026013-PA | ||||||||
Common Name | OsI_26625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 534aa MW: 57604.8 Da PI: 5.3985 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.6e-06 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H BGIOSGA026013-PA 59 FVCEVCGKGFQRDQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.8e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ + +Lk H +t+ BGIOSGA026013-PA 137 WTCQRCGKRYAVQADLKAHTKTC 159 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-7 | 58 | 81 | No hit | No description |
SMART | SM00355 | 0.014 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 59 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.05E-7 | 132 | 157 | No hit | No description |
SMART | SM00355 | 90 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.787 | 137 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV 60 CEVCGKGFQR DQNLQLHRRG HNLPWRLRQH GPGAAPPRRR VYVCPEPGCV HHNPTRALGD 120 LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT 180 HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKE EEVKEKEKEK ELEENEDSPV 240 AEVDEPQPSQ AVAEVPQQCA PSPPPPILQE HPQPVVAVVP NVDEQEVVAK PAVIAKIEVE 300 DERDEEVCFQ EADRYKDAEL EDSNLLDNDT PMLPCFLPSP SEAIGTDGSS TSCGTGSSVT 360 NAIAPATTTS TFAGLFASVT TSSTPQSRSL RDLIGVDPTF LCLAIGAPSS LFPQTNASDP 420 CSFAPPPAPH MSATALLQKA AEVGASQSSS SFLKEFGLAA STSSSPPSKL SHGRFTTVLS 480 YSCKLVDSIR CAEFGVLSTE HVDVLWKGKG ENERVEFLLG LIVQTYYRFV SSFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-29 | 133 | 195 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 7e-29 | 133 | 195 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60947 | 0.0 | panicle |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004185 | 0.0 | AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12. | |||
GenBank | AP004276 | 0.0 | AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647948.1 | 0.0 | protein indeterminate-domain 1 | ||||
TrEMBL | A2YN16 | 0.0 | A2YN16_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA07G18460.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11829 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 2e-98 | C2H2 family protein |