PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA025976-PA | ||||||||
Common Name | OsI_26553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | YABBY | ||||||||
Protein Properties | Length: 129aa MW: 14252.6 Da PI: 11.636 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 27.4 | 1e-08 | 12 | 41 | 6 | 35 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvv 35 e++ vqC+fC t+l+vsvP +s+++vv BGIOSGA025976-PA 12 LRERLGCVQCSFCATVLLVSVPCSSVLRVV 41 5689999********************999 PP | |||||||
2 | YABBY | 89.2 | 1.1e-27 | 72 | 123 | 118 | 169 |
YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 P ++qr Psayn+f+keei+rik+ P+i+h++afs+aaknWah+P+i + BGIOSGA025976-PA 72 APGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 123 6999********************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.4E-7 | 13 | 41 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 70 | 119 | IPR009071 | High mobility group box domain |
Pfam | PF04690 | 2.4E-26 | 70 | 122 | IPR006780 | YABBY protein |
Gene3D | G3DSA:1.10.30.10 | 5.5E-5 | 74 | 122 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VGRAVRPLLR HPLRRQPAAV 60 AGVGVHRADS TAPGRKQRTP SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI 120 QQKRGRDSC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.47781 | 1e-115 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982641 | 1e-115 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274019 | 1e-113 | AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds. | |||
GenBank | AK072618 | 1e-113 | AK072618.1 Oryza sativa Japonica Group cDNA clone:J023130N03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647119.1 | 2e-52 | protein YABBY 7 isoform X2 | ||||
Swissprot | A2PZN8 | 1e-53 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A2YMU8 | 3e-89 | A2YMU8_ORYSI; Uncharacterized protein | ||||
STRING | OMERI07G16360.2 | 8e-54 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-20 | YABBY family protein |