PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025947-PA
Common NameOsI_26485
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 802aa    MW: 89025.2 Da    PI: 8.0137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025947-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.4e-19300399198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  BGIOSGA025947-PA 300 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 390
                       89**************************777788889***************9989999999***9.********************987.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  BGIOSGA025947-PA 391 GKLVMGFRK 399
                       777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.101.8E-29296401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19297399IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-22298399No hitNo description
SMARTSM010195.7E-21300400IPR003340B3 DNA binding domain
PfamPF023626.5E-16300399IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251300401IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17555605IPR011124Zinc finger, CW-type
PfamPF074964.0E-11560602IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM  60
CARKSHAAMA PSPIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS  120
DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERKGVTSDP  180
CSSVSTTFKL DSHHPSILKD DPSAVPAGLS SNFSSANGPK DHIRIGPTQQ QQQMASSSLQ  240
KQFYSHSVID NDFQAQLRNG RPRMDAKARS QLLPRYWPRI TDQELQHLSG DSNSVITPLF  300
EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QAEGLPLKVQ DATGKEWVFQ FRFWPNNNSR  360
MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA TNLSAEQDQP TKPANGVLPP  420
PEANNKVVVP DSSPNAAVPR PIKVNTESKS SSPVEQATAC KIDKGALPQK EGPGTSSSSP  480
LPVKRKATSV GPKIKRFHMD SEESMELKIT WEEAQELLRP PPKAPSIVVV DGHEFEEYEE  540
PPILGRRTYF VTDQSGENHQ WAQCEDCSKW RKLPVDALLP SKWTCSDNKW DSERSSCDSA  600
QEINMEELGE MIPIKPGAAK KTKGKVDTDN IDVSDGLDTL ANLAILGEGE SLPSQPTTRH  660
PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCMTVRRRFR TLMMRREKRQ QSEKDSGVPR  720
KREPGQSSEP VPQSGSGAHP TSTSSPHQRA DTNGEGPEDM SIDNKRTSSP VKNQIDLNSQ  780
PEREDEQSPK SDATRLLRDN PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-652784022126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.460190.0callus| flower| leaf| panicle| root| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLB8B7G40.0B8B7G4_ORYSI; Uncharacterized protein
STRINGOBART07G18780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1