PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025902-PA
Common NameOsI_26385
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 569aa    MW: 64486.1 Da    PI: 6.1768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025902-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.4e-1282005682373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cAea+s++ +e+ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l++++++++++P++kf+
  BGIOSGA025902-PA 200 KQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMRILYNICPYFKFG 289
                       689*****************************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l +  
  BGIOSGA025902-PA 290 YMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEyaRGEGLDIVGKMLKSMSEEFKIPLEFTPL-SVY 381
                       ********************************************************999999**************************6.788 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf e++eyysa+f+s++a+lpr+
  BGIOSGA025902-PA 382 ATQVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRD 474
                       99999**************************************************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGF+p+pls+++++ ++ ll+ ++ d y+++e++g+++lgW++r+L+s+S
  BGIOSGA025902-PA 475 NKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYS-DKYTLDEKDGAMLLGWRSRKLISAS 566
                       ***************************************************************9999.55*********************** PP

              GRAS 372 aW 373
                       aW
  BGIOSGA025902-PA 567 AW 568
                       ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.29173550IPR005202Transcription factor GRAS
PfamPF035141.9E-125200568IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGFSWVRELD NVLLLELRAH ENNLQNSPWQ ANPLKYEFSD SPYTPLSSQF ECDNLSALTN  60
TPDNQSSTET ISAQPISPLE ADSSYRQTGI LLRENIQVGA DPLYATSRHN MQHALREIET  120
VLMAPDTDDA TTSTKHEFEE IKPAQLVRQR SRTWSHESRQ PLPGVGRSQF ASGGYPTASY  180
EFRPEKRQRE LREDPQMIVK QLLTRCAEAL SEDRTEEFHK LVQEARGVVS INGEPIQRLG  240
AYLLEGLVAR HGNSGTNIYR ALKCREPESK ELLSYMRILY NICPYFKFGY MAANGAIAEA  300
LRTENNIHII DFQIAQGTQW ITLIQALAAR PGGPPRVRIT GIDDPVSEYA RGEGLDIVGK  360
MLKSMSEEFK IPLEFTPLSV YATQVTKEML EIRPGEALAV NFTLQLHHTP DESVDVNNPR  420
DGLLRMVKGL SPKVTTLVEQ ESHTNTTPFL MRFGETMEYY SAMFESIDAN LPRDNKERIS  480
VEQHCLAKDI VNIIACEGKD RVERHELLGK WKSRLTMAGF RPYPLSSYVN SVIRKLLACY  540
SDKYTLDEKD GAMLLGWRSR KLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-691835683378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.94820.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329792900.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042350.0AP004235.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0006G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646796.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA2YMC90.0A2YMC9_ORYSI; Uncharacterized protein
STRINGONIVA07G16090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]