PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025721-PA
Common NameOsI_26043
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 985aa    MW: 109500 Da    PI: 8.5984
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025721-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1131.33.6e-4111920432117
              CG-1  32 trpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                        +   g+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f rrcywlL+++le+ivlvhy+++
  BGIOSGA025721-PA 119 AQMDGGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNFFRRCYWLLDKDLERIVLVHYRQT 204
                       567789*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010761.3E-3893205IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143763.57698210IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-34122203IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.48E-10433519IPR014756Immunoglobulin E-set
SuperFamilySSF484033.42E-17608732IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-17618732IPR020683Ankyrin repeat-containing domain
CDDcd002044.46E-15618726No hitNo description
PROSITE profilePS5029717.953634738IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-7640730IPR020683Ankyrin repeat-containing domain
SMARTSM002489.6E-6667696IPR002110Ankyrin repeat
PROSITE profilePS5008811.835667699IPR002110Ankyrin repeat
SMARTSM00248580706735IPR002110Ankyrin repeat
SuperFamilySSF525401.04E-8783884IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54818844IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5833855IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785834861IPR000048IQ motif, EF-hand binding site
PfamPF006120.0022836854IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016856878IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274857881IPR000048IQ motif, EF-hand binding site
PfamPF006120.0099859878IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4939961IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084941969IPR000048IQ motif, EF-hand binding site
PfamPF006120.047942961IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MGNSGGEWAM PSQYPFHQPR MGPRSALAAA VVVAVAAEGD LDGGGWGRGR NRPRRWGRSS  60
GSGGSPRGED LQRGCSDVVA EHAGRRSKRG GGEAKSSRVE EEQRNIRAWM DRAVVKSCAQ  120
MDGGTVVLYD RKVVRNFRKD GHNWKKKKDG RTVQEAHEKL KIGNEERVHV YYARGEDDPN  180
FFRRCYWLLD KDLERIVLVH YRQTAEENAM APPNPEPEVA DVPTVNLIHY TSPLTSADST  240
SGHTELSLPE EINSHGGISA SSETGNHDSS LEEFWANLLE SSIKNDPKVV TSACGGSFVS  300
SQQINNGPKN SGNIVNTSMA SNAIPALNVV SETYATNHGL NQVNANHFGA LKHQGDQTQS  360
LLASDVDSQS DQFISSSVKS PMDGNTSIPN EVPARQNSLG LWKYLDDDSP GLGDNPSSVP  420
QSFCPVTNER LLEINEISPE WAYSTETTKV VVIGNFYEQY KHLAGSAMFG VFGDQCVAGD  480
IVQTGVYRFM VGPHTPGKVD FYLTLDGKTP ISEICSFTYH VMHGSSLEAR LPPSEDDYKR  540
TNLKMQMRLA RLLFATNKKK IAPKLLVEGT KVANLMSALP EKEWMDLWNI LSDPEGTYVP  600
VTESLLELVL RNRLQEWLVE MVMEGHKSTG RDDLGQGAIH LCSFLGYTWA IRLFSLSGFS  660
LDFRDSSGWT ALHWAAYHGR ERMVATLLSA GANPSLVTDP TPESPAGLTA ADLAARQGYD  720
GLAAYLAEKG LTAHFEAMSL SKDTEQSPSK TRLTKLQSEK FEHLSEQELC LKESLAAYRN  780
AADAASNIQA ALRERTLKLQ TKAIQLANPE IEASEIVAAM KIQHAFRNYN RKKAMRAAAR  840
IQSHFRTWKM RRNFINMRRQ VIRIQAAYRG HQVRRQYRKV IWSVGIVEKA ILRWRKKRKG  900
LRGIASGMPV VMTVDAEAEP ASTAEEDFFQ AGRQQAEDRF NRSVVRVQAL FRSYKAQQEY  960
RRMKIAHEEA KIEFSEGQLG AACRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884220.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809990.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646431.10.0calmodulin-binding transcription activator CBT-like isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLB8B6740.0B8B674_ORYSI; Uncharacterized protein
STRINGOS07T0490200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators