PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA025449-PA | ||||||||
Common Name | OsI_25500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 35844.5 Da PI: 9.3149 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5e-17 | 94 | 140 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l BGIOSGA025449-PA 94 KGGWTREEDEVLRQMVQHHGDRKWAEIAKSLP-GRIGKQCRERWTNHL 140 688*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 146 | 188 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g WT+eEd +l++a++ +G++ W++Iar ++ gR+++ +k+rw+ BGIOSGA025449-PA 146 KGIWTEEEDRKLIRAHQTYGNR-WSAIARSLP-GRSENTVKNRWN 188 678*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.178 | 89 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-31 | 91 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 93 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 94 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 96 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-16 | 97 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 145 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-17 | 145 | 193 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.274 | 145 | 195 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-16 | 146 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.36E-15 | 149 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MATDRMPDSH FMASSNGGAC YQNTHGTPIT MGVPNLGCLV ASIGIAPSSS LMPERGLATA 60 NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWTRE EDEVLRQMVQ HHGDRKWAEI 120 AKSLPGRIGK QCRERWTNHL HPDIKKGIWT EEEDRKLIRA HQTYGNRWSA IARSLPGRSE 180 NTVKNRWNAT KRSLNSKRRL RKKNSEQAVP RQPSLLEEYI RSCQHPLPNE TAPPASFDIG 240 GYGTGGTIGA SPTPPTVHAL GGSTPLGLVM FLDLLNQATP HPPQPDLNLL NITPVVPHLN 300 TSGYCLQLDA RGNCSMASCR CNPTGSAPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-40 | 92 | 192 | 2 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-39 | 58 | 192 | 25 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-39 | 58 | 192 | 25 | 156 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645903.1 | 1e-169 | transcription factor MYB119 | ||||
TrEMBL | A2YJV0 | 0.0 | A2YJV0_ORYSI; Uncharacterized protein | ||||
STRING | OBART07G08680.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-44 | myb domain protein 98 |