PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024793-PA
Common NameOsI_24957
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 378aa    MW: 39998.8 Da    PI: 8.9423
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024793-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.82e-29218272358
         CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p+YVNaKQ+++I++RR +Rak+e+e+++ ++srkpylheSRh+hA+rR+RgsgGrF
  BGIOSGA024793-PA 218 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 272
                       9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-32214275IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.417215275IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22218240IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-30218272IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860220240IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-22249272IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGLPERVHMI NALVMFYRGS RCAMAALSFQ DHGHGLQAIT GRGGNGGAAA HALPWWAGAG  60
AGAGSQTLLG TGGGEESFCQ LSNTIMEDTR ILQNHHHQIL AAGRQLQQRH HFPAMPPERH  120
HHPPPPAPGS PAMKFPIISG DSDLGKDLKF HESSAPTIAA YSPLQEYQGH FELALGHSMV  180
CTNFCNSEQS YGVYSPYGAQ TMAGRMLLPP AIATDVGPIY VNAKQFNGII RRRLARAKAE  240
REHRVSRSRK PYLHESRHRH AMRRARGSGG RFLNTKNASS AAAAAADAAP VSSGGGDHGA  300
SNKSSSASEA TRVYDDDDDM GAGGGGDGGD FHHAMGHLRS PAFFPSLAAM MDGGGGGGEG  360
KWATATPHHG CRVDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-17217274361HAPB protein
4g92_A2e-17217274361HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256265RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054540.0AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.10.0nuclear transcription factor Y subunit A-2
TrEMBLB8B7E00.0B8B7E0_ORYSI; Uncharacterized protein
STRINGOS07T0158500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-25nuclear factor Y, subunit A10