PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024709-PA
Common NameOsI_25144
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 722aa    MW: 78910.5 Da    PI: 7.9192
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024709-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-18120239199
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-.......TTHHHHHHHHT CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy.....rkksgryvlt.......kGWkeFvkang 73 
                       f+k+l+p+dv++++ lvlp     eh         +++++     ++d++g+++e+ +i+     +kk++ry+l+       +GW++Fvka++
  BGIOSGA024709-PA 120 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWdkniwDKKRCRYMLGdlgvndnDGWRGFVKAKR 207
                       99***********9.9999774..5659999887666555..78999***********99999999*************************** PP

                       --TT-EEEEE......E-SSSEE..EEEEE-S CS
                B3  74 LkegDfvvFk......ldgrsefelvvkvfrk 99 
                       L ++D+vvF+       dg+ ++el+v+v+r+
  BGIOSGA024709-PA 208 LATRDTVVFMrrggggGDGDGDGELLVGVRRA 239
                       **********7776655566788888888876 PP
2B377.21.8e-24443548199
                       EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k+l+psd+ ++     +++v+pk+ a+eh ++ + + +l++++++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F+
  BGIOSGA024709-PA 443 FDKKLSPSDAAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTNLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFM 533
                       899******999988888899**********776.455.9********************99999999************************* PP

                       E-SSSEE..EEEEE-S CS
                B3  84 ldgrsefelvvkvfrk 99 
                       + +r ++e+ v+v+rk
  BGIOSGA024709-PA 534 R-RRPGGEPIVGVRRK 548
                       4.44**********98 PP
3Auxin_resp27.91e-10264338476
        Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                       +++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  BGIOSGA024709-PA 264 EMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 338
                       5666789*******************9875333344999***********998875.569******9999966555 PP
4Auxin_resp34.31e-125716282083
        Auxin_resp  20 stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                       +t+eFvv++e+ve +   ++++G+R+++ ++ +d+++r++   +Gtv++v+        +SkWr+L+
  BGIOSGA024709-PA 571 GTAEFVVRREEVEGSP--PLAPGTRVRLLMNPDDVRRRSQppvYGTVRDVHS-------RSKWRMLE 628
                       799************9..*********************9888888888888.......99***995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-20113243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-12115222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-8118216No hitNo description
PfamPF023622.3E-14120239IPR003340B3 DNA binding domain
SMARTSM010190.012120240IPR003340B3 DNA binding domain
PROSITE profilePS508638.106198240IPR003340B3 DNA binding domain
PfamPF065073.0E-5269341IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.102.3E-18437548IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-14438547IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-12442547No hitNo description
SMARTSM010195.6E-7443549IPR003340B3 DNA binding domain
PROSITE profilePS5086310.673448549IPR003340B3 DNA binding domain
PfamPF023621.3E-14458548IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL  60
LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF  120
EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKNIWD  180
KKRCRYMLGD LGVNDNDGWR GFVKAKRLAT RDTVVFMRRG GGGGDGDGDG ELLVGVRRAP  240
RARGGHHPRP GVEDNKVVSE VWLEMQGVTP FEVTYYPREG TFEFVVSRDE YIGFSFSPFY  300
PFVPGTTVHL RMNPLQIAQS ISGTVRTFDH LRPWRMLEVD WDQAASPISY RIRRQVNSWQ  360
VLRQPQPAAT TSAVRIRDAI VATPQVQIMA PPRPPPPTTT TGMVPSDDSY AMISLFPGDC  420
YVTHRPLPAA RDPVGGQREF CFFDKKLSPS DAAANGGGSG ALFVIPKPSA AEHVLPRIPD  480
LRVTNLQGGR WEFGHTWSDA DTDRRSSSHT LAAGWSAFVK AKRLCVGDTV IFMRRRPGGE  540
PIVGVRRKPH GGMLVGIPDK HVADAWLDAV GTAEFVVRRE EVEGSPPLAP GTRVRLLMNP  600
DDVRRRSQPP VYGTVRDVHS RSKWRMLEVD WDRDSPLAPT MNRRVNSWQV QPVQLALPPQ  660
GSDEAAAAAT TSTAHAGDAT TSAPSLALQL QTMASSSSSS APIIPSRGSA FRIVNPRDGS  720
QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-231834350372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLB8B7V50.0B8B7V5_ORYSI; Auxin response factor
STRINGONIVA07G04100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.41e-22auxin response factor 2