PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA024099-PA | ||||||||
Common Name | OsI_26460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 34480.8 Da PI: 6.3394 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 14 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +g+WT+eEde+lv ++k++G g+W+t ++ gRt++++k++w+++ BGIOSGA024099-PA 14 KGPWTPEEDEKLVAYIKEHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65 79********************9987666555555555************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 5 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-16 | 9 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.868 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-16 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAAIAARL PGRTDNEIKN 60 YWNTHIRKRL LRMGIDPVTH APRLDLLDLT SLLKPAAAAA YYPTQADLDT LRALEPLAGY 120 PDLLRLASAI LPAATTTGAA AAAAAEQAQL LLPWLLQAQM AQQQQQVTPP PPPPPQAAAT 180 EQFLQATSTA CHQMPGLVHA SPTQQLAQQP QDHMAAATCH RRGAVQHPSY DNQLDYVPAL 240 MQMASDASNL QQWSSTVSSS NNHNVNSGVS TPSSSPAAAG QINSSSTTTT TTYGLNASGD 300 VDDAGLLINM HLSELLDVSD YM |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 1946266 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645522.1 | 1e-164 | transcription factor MYB102 | ||||
TrEMBL | A2YMK8 | 0.0 | A2YMK8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G20400.1 | 1e-164 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-42 | MYB-like 102 |