PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024099-PA
Common NameOsI_26460
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 322aa    MW: 34480.8 Da    PI: 6.3394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024099-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181465147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +g+WT+eEde+lv ++k++G g+W+t ++         gRt++++k++w+++
  BGIOSGA024099-PA 14 KGPWTPEEDEKLVAYIKEHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65
                      79********************9987666555555555************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-24574IPR009057Homeodomain-like
SuperFamilySSF466891.08E-16976IPR009057Homeodomain-like
PROSITE profilePS5129423.868970IPR017930Myb domain
SMARTSM007171.3E-151368IPR001005SANT/Myb domain
PfamPF002492.2E-151465IPR001005SANT/Myb domain
CDDcd001671.08E-161666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAAIAARL PGRTDNEIKN  60
YWNTHIRKRL LRMGIDPVTH APRLDLLDLT SLLKPAAAAA YYPTQADLDT LRALEPLAGY  120
PDLLRLASAI LPAATTTGAA AAAAAEQAQL LLPWLLQAQM AQQQQQVTPP PPPPPQAAAT  180
EQFLQATSTA CHQMPGLVHA SPTQQLAQQP QDHMAAATCH RRGAVQHPSY DNQLDYVPAL  240
MQMASDASNL QQWSSTVSSS NNHNVNSGVS TPSSSPAAAG QINSSSTTTT TTYGLNASGD  300
VDDAGLLINM HLSELLDVSD YM
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO19462660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645522.11e-164transcription factor MYB102
TrEMBLA2YMK80.0A2YMK8_ORYSI; Uncharacterized protein
STRINGONIVA06G20400.11e-164(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-42MYB-like 102