PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023710-PA

Common Name

OsI_27345

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 336aa MW: 36152.9 Da PI: 8.1071

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023710-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.7e-10	133	178	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l BGIOSGA023710-PA 133 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLT 178 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	131	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-8	133	178	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	133	184	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-8	133	187	No hit	No description
CDD	cd14703	1.53E-22	134	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MPQLCTQDWI PAAAPLCAST CPCRLDGCRL AAATVLQTAP RSCSQDPGDR RPVPLGCSNL 60 PTCYFCLLPC SVRRSTRRGA SFDGFAFGAG AGGPGTGLGK QQDGAGGVFS EVMEAKKAMS 120 SEQLAELAAI DPKRAKRILA NRQSAARSKE RKARYITELE RKVQTLQTEA TTLSAQLTLF 180 QRDTTGLSAE NAELKIRLQA MEQQAQLRDA LNDALKQEVE RLKIATGEMA KSNDAYNTGM 240 QQVPYSPSFF QLSDQHAVQH HAGVQQLPHQ FQQPHPSVPS HQMLSHPNSL SDMMQQDSLG 300 RLQGLDIGKG PVAVKNEAEV VVKSEGSSIS AGGEGH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.54213	0.0	callus\| leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32987771	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102562	0.0	AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646776.1	1e-179	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-109	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A2YPZ0	0.0	A2YPZ0_ORYSI; Uncharacterized protein
STRING	ORGLA07G0207300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	7e-68	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]