PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA023435-PA | ||||||||
Common Name | OsI_24042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 174aa MW: 20195.2 Da PI: 6.2857 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.8 | 4.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s BGIOSGA023435-PA 9 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 53.4 | 1.1e-18 | 82 | 158 | 9 | 84 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++++ e++ e+++L++ei++L+ ++R+ GedL+s s + eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ BGIOSGA023435-PA 82 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMV 158 4556678999***************************984689*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.726 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-36 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.27E-28 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-17 | 84 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.354 | 87 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP 60 PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS 120 TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMVHY SLIVVAVVVF ADEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY174093 | 0.0 | AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882176.1 | 1e-110 | MADS-box transcription factor 30 isoform X6 | ||||
Swissprot | Q655V4 | 1e-110 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | B8B160 | 1e-124 | B8B160_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FQE1 | 1e-122 | B9FQE1_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI06G25880.1 | 1e-122 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 9e-38 | MIKC_MADS family protein |