PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023284-PA
Common NameOsI_23742
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 304aa    MW: 32629.5 Da    PI: 4.503
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023284-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.91.6e-11142194456
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       +k+ rr ++NR +A +sR+RKk++++ Le+k+k Leae ++L   l+    e 
  BGIOSGA023284-PA 142 SKKKRRQMRNRDSAMKSRERKKMYVKDLETKSKYLEAECRRLSYALQCCAAEN 194
                       79*************************************99987776655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-13138202No hitNo description
SMARTSM003385.9E-6138203IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.737141183IPR004827Basic-leucine zipper domain
PfamPF001702.4E-10142199IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-11143201No hitNo description
CDDcd147041.56E-13144195No hitNo description
PROSITE patternPS000360146161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDVEFFADLD LDALLASFSS SAAAAGSGVS GLFAPSPPHD AEAGSPESVS SRRPSPSREA  60
ALSEIERFLM EEGPAAEEGV GAEDFFDALL VDGGEEEEEE EGKGSEAGGS TDGDSGKENE  120
VATPDAEKED VEAEVDGDDP MSKKKRRQMR NRDSAMKSRE RKKMYVKDLE TKSKYLEAEC  180
RRLSYALQCC AAENMALRQS LLKDRPVGAA TAMQESAVLT ETLPLVSLLW LVSIVCLLLV  240
PGLPNRNPVA RSSAGRDLAT VTGKKTSSEQ QLEETLLLHG RRCKGSRARI KLDTGPFRLA  300
AAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.106860.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329922300.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070210.0AK107021.1 Oryza sativa Japonica Group cDNA clone:002-121-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641141.10.0bZIP transcription factor 50
SwissprotQ69XV00.0BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLA0A0E0HTM70.0A0A0E0HTM7_ORYNI; Uncharacterized protein
TrEMBLB8B4P40.0B8B4P4_ORYSI; Uncharacterized protein
STRINGONIVA06G25200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.17e-12basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]