PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023262-PA
Common NameOsI_23689
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 341aa    MW: 36849.8 Da    PI: 7.4493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023262-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05172191120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  BGIOSGA023262-PA 172 FSCPVCYKTFNRYNNMQMHM 191
                       89*****************9 PP
2zf-C2H214.30.00012256278123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  BGIOSGA023262-PA 256 FMCRKCGKAFAVRGDWRTHEKNC 278
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.97E-5168194No hitNo description
SMARTSM003550.45172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743172199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-6172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-6240276No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6252276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549256276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDKYKREALP LLSLTPSTTH DDDHHHRRHD QDHHHHHKQG QEKNSHGGGG AASCSNNDDK  60
RESPSAAAAA DDQAAEVTVA LHIGLPSPSP SDAAAAAGNQ AAAAAAAEAS AAGGGSSRMQ  120
VEEEGGEEED EDEAAATATL PLGCASIGIG KLTKGQYWIP TPSQILIGPT QFSCPVCYKT  180
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID HPRARPLKDF  240
RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF KHKRSLKDHI  300
RAFGRGHAAC GIDSFDDLDA DDDPSSDLDH ASASASASRV G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.492700.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329811270.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642156.11e-168zinc finger protein WIP2
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB8B4L10.0B8B4L1_ORYSI; Uncharacterized protein
STRINGORUFI06G22350.11e-167(Oryza rufipogon)
STRINGOS06T0612300-011e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]