PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA023119-PA | ||||||||
Common Name | OsI_23440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 387aa MW: 40756.4 Da PI: 9.6834 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.5 | 1.5e-17 | 200 | 233 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + BGIOSGA023119-PA 200 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 233 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.14E-12 | 194 | 234 | No hit | No description |
SMART | SM00401 | 2.4E-19 | 194 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.268 | 198 | 230 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 198 | 233 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.03E-14 | 199 | 236 | No hit | No description |
Pfam | PF00320 | 3.0E-15 | 200 | 233 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 200 | 225 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MSTIYMSQLS AALPLMEGEH HQDHHQGHFQ AFSLQPKDPP VLFPFVINRR SSSSSPSDST 60 TLSYGSDHHL TQQQQHQHQA MLEPQHMIGG SSAGIFATPF PTVKSIRDDM IERSQFDPYD 120 TEKLQASCGL AKVVAGGKWS AVPAAKMKIT RKMGEPSSGV TGGAATTVAP KKPRRRLAQA 180 YEDHGHGGAM GQAFGVIRVC SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMMASG 240 LPASPNAAGP KAAAHSGAAA VAAAQPKVKK EKRADVDRSS LPFKKRCKAV QVEDHQTLPA 300 ATNAAAAAAM EETAESATVA PPPAPTTRGC TLVDSIGLSW SKTHAAATAS CSFRPSPVAP 360 GFAAAVQDEI TDAAMLLMTL SCGLVRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 176 | PKKPRRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87914 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979875 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069851 | 0.0 | AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641328.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
Refseq | XP_015641329.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
Refseq | XP_025882362.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
TrEMBL | A0A0E0HST1 | 0.0 | A0A0E0HST1_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8B3U7 | 0.0 | B8B3U7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G22870.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-19 | GATA family protein |