PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA022657-PA | ||||||||
Common Name | OsI_22452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 447aa MW: 48119.7 Da PI: 4.9546 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.4 | 5.9e-08 | 18 | 59 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ BGIOSGA022657-PA 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59 678*****************************6567777776 PP | |||||||
2 | CCT | 67.3 | 4.1e-23 | 392 | 435 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a BGIOSGA022657-PA 392 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 435 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.623 | 16 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-11 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 18 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.65E-9 | 19 | 63 | No hit | No description |
Pfam | PF06203 | 7.6E-18 | 392 | 434 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 392 | 434 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 447 aa Download sequence Send to blast |
MSSKAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60 LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE 120 EAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG 180 AVENPTKPSM TTTTATTPPL QFFPDGHANF GPTDAELREF AADMEALLGR GLDDGNDEDS 240 FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDYGSPQAAT 300 TPDEKVGSSG PAAAADDDAQ FQQSSLALSL NYEAIIESWG TSPWTDGERP RVKLDDSWPR 360 DYSGVWMAAA GVFGHGGEEQ ALTPRLGMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN 420 AEKRPRMKGR FVKRAAAAAA VATACVA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 402 | 418 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.38848 | 0.0 | leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 297605544 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241249 | 0.0 | AK241249.1 Oryza sativa Japonica Group cDNA, clone: J065129J23, full insert sequence. | |||
GenBank | AK287836 | 0.0 | AK287836.1 Oryza sativa Japonica Group cDNA, clone: J065191O19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641417.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A2YBG7 | 0.0 | A2YBG7_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI06G10540.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3283 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-65 | B-box type zinc finger protein with CCT domain |