PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022652-PA | ||||||||
Common Name | OsI_22428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 153aa MW: 16927.3 Da PI: 11.9939 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.1e-08 | 80 | 123 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 ++T+ +d+ l ++v + Ggg +Wk I+r + gR+ ++k rw BGIOSGA022652-PA 80 PFTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 123 79******************************.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.58E-10 | 68 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-8 | 72 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0073 | 77 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.062 | 80 | 126 | IPR017877 | Myb-like domain |
CDD | cd00167 | 9.05E-6 | 80 | 125 | No hit | No description |
Pfam | PF00249 | 8.2E-6 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MCFRRHSVVR AAEREVLRRP AHQAPAGVDA RGGRRPGAPR RGERLPPLAP RGGADAAQAL 60 ASAVPRQVED HLARDVFHRP FTAADDDELT RLVLRPGGGG DRWKDISRAV HGRSSRSVKR 120 RWMEIGTSDE LLRKLWHPRS SMLSPATVVD AVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005527 | 0.0 | AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642266.1 | 2e-38 | transcription factor MYB44 | ||||
TrEMBL | B8B0B3 | 1e-102 | B8B0B3_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FSL5 | 1e-102 | B9FSL5_ORYSJ; Uncharacterized protein | ||||
STRING | OBART06G09910.1 | 1e-58 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |