PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022651-PA | ||||||||
Common Name | OsI_22427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 177aa MW: 19863.7 Da PI: 11.6719 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 39 | 84 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W+++a+ m+ +R++ qc++rw+++l BGIOSGA022651-PA 39 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 84 6*****************************99***********986 PP | |||||||
2 | Myb_DNA-binding | 22.5 | 2.6e-07 | 92 | 135 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 + T+ +d+ l ++v + Ggg +Wk I+r + gR+ ++k rw BGIOSGA022651-PA 92 PYTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 135 679999999*********99************.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.822 | 32 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-11 | 36 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.97E-20 | 39 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 39 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-14 | 39 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-11 | 39 | 84 | No hit | No description |
SMART | SM00717 | 0.017 | 89 | 140 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.143 | 92 | 138 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.21E-4 | 92 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-7 | 97 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAMMEPSSSS SSSASAVTPS SAPPSGRCCV VLRIKLLAAW TPEEDAALER LAVENGSRHW 60 RRVAAQMPRK RSPVQCRDRW RDHLARDVFH RPYTAADDDE LTRLVLRPGG GGDRWKDISR 120 AVHGRSSRSV KRRWMEIGTS DELLRKLAPP VIDAVSGHGG GRRRLMRPNQ AFGWRRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 3e-15 | 31 | 139 | 1 | 108 | MYB21 |
3osf_D | 3e-15 | 31 | 139 | 1 | 108 | MYB21 |
3osg_A | 3e-15 | 31 | 139 | 1 | 108 | MYB21 |
3osg_D | 3e-15 | 31 | 139 | 1 | 108 | MYB21 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642266.1 | 1e-117 | transcription factor MYB44 | ||||
TrEMBL | A2YBF1 | 1e-123 | A2YBF1_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA06G0093600.1 | 1e-116 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-16 | myb domain protein r1 |