PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022651-PA
Common NameOsI_22427
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 177aa    MW: 19863.7 Da    PI: 11.6719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022651-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-153984348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+eEd  l ++  + G+++W+++a+ m+ +R++ qc++rw+++l
  BGIOSGA022651-PA 39 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 84
                      6*****************************99***********986 PP

2Myb_DNA-binding22.52.6e-0792135345
                       SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 
                       + T+ +d+ l ++v + Ggg  +Wk I+r +  gR+  ++k rw 
  BGIOSGA022651-PA  92 PYTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 135
                       679999999*********99************.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8223288IPR017930Myb domain
SMARTSM007172.1E-113686IPR001005SANT/Myb domain
SuperFamilySSF466896.97E-2039134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-163996IPR009057Homeodomain-like
PfamPF002492.4E-143984IPR001005SANT/Myb domain
CDDcd001671.87E-113984No hitNo description
SMARTSM007170.01789140IPR001005SANT/Myb domain
PROSITE profilePS500907.14392138IPR017877Myb-like domain
CDDcd001672.21E-492137No hitNo description
Gene3DG3DSA:1.10.10.603.9E-797136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAMMEPSSSS SSSASAVTPS SAPPSGRCCV VLRIKLLAAW TPEEDAALER LAVENGSRHW  60
RRVAAQMPRK RSPVQCRDRW RDHLARDVFH RPYTAADDDE LTRLVLRPGG GGDRWKDISR  120
AVHGRSSRSV KRRWMEIGTS DELLRKLAPP VIDAVSGHGG GRRRLMRPNQ AFGWRRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A3e-15311391108MYB21
3osf_D3e-15311391108MYB21
3osg_A3e-15311391108MYB21
3osg_D3e-15311391108MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642266.11e-117transcription factor MYB44
TrEMBLA2YBF11e-123A2YBF1_ORYSI; Uncharacterized protein
STRINGORGLA06G0093600.11e-116(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-16myb domain protein r1