PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022619-PA
Common NameOsI_22357
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 393aa    MW: 44379 Da    PI: 8.7344
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022619-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP54.22.4e-1741951271
           E2F_TDP 12 kflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                      +f++l+ +++ + v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  BGIOSGA022619-PA 41 SFVALYDREDVESVGLDDAARRL---GV--ERRRIYDIVNVLESIGMLVRRAKNRYTWIG 95
                      6999*999999************...**..****************************98 PP
2E2F_TDP811e-25176256171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  BGIOSGA022619-PA 176 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 256
                       79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.2E-18995IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.41E-133894IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.3E-154195IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-184196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-24173257IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-33176256IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.2E-21177256IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-13178256IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MFCWTISKRD EAPLTLYASR NRYSFLEVDL AGPPWCVWFA SFVALYDRED VESVGLDDAA  60
RRLGVERRRI YDIVNVLESI GMLVRRAKNR YTWIGFGGVP AALAKLKEMS LRAVSSVASP  120
SLDETSAANV SDDEDDDKLD DAEGDAESEK LSLSQSIDNP SDKPDAPPCK LRSEHRKEKS  180
LGLLTQNFVK LFLTMEIETI SLDEAAKRLL GEGHAANNMR TKVRRLYDIA NVLSSLNLIE  240
KTQQADSRKP AFRWLGQAKR NEGVTVALPP TKTLPNKRAF GTDLTNIDNK RGKLDSTMEN  300
RGKPTQDGGN LFNNLQRQLG QENRSDFVYG PFHPAVARKQ EHGNRTVQEK ERKSIQDWEN  360
LASSFRPQYQ NPVLHKRQEA NETWKLLSAR GLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-315424832228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.501970.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896550.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
TrEMBLB8B4H60.0B8B4H6_ORYSI; Uncharacterized protein
STRINGORUFI06G09470.10.0(Oryza rufipogon)
STRINGOS06T0245900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-79DP-E2F-like 1