PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022506-PA
Common NameOsI_22082
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 306aa    MW: 32885.9 Da    PI: 8.2951
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022506-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.3e-2486129144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e
  BGIOSGA022506-PA  86 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129
                       79***************************************997 PP
2QLQ62.61e-211044236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++
  BGIOSGA022506-PA 10 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 44
                      5******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-10945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0391045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-161143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.71486130IPR014977WRC domain
PfamPF088791.5E-1987129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGGGSGRCL FTATQWQELE HQALIYKYMA AGAPVPPDLL LHLRHRAAAA AAADVDTVPS  60
LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG  120
KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA GAGAPLQLHL DSFHASTSPP  180
PSYHRYAHTS SAPLFPSSAA GYGGGWSLSK EHCLTLGGAA ADLSLDKPAD HHHDATSATT  240
EKPLRRFFDE WPRSDDGRTP WDGTQLSISI PTAAAASPDL AIAGAASRYH SNALVYIRLM  300
LTPYFC
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361980.0CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641768.10.0growth-regulating factor 2
SwissprotQ6AWY70.0GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLB8B3W80.0B8B3W8_ORYSI; Uncharacterized protein
STRINGOS06T0204800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-41growth-regulating factor 5