PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022168-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 181aa    MW: 20669.3 Da    PI: 10.3123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022168-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-181562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+llv+++ + G g+W++ ++  g++R++k+c++rw +yl
  BGIOSGA022168-PA 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding49.87.7e-1668113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++ +E+ l++++++ lG++ W++Ia ++  gRt++++k++w+++l
  BGIOSGA022168-PA  68 RGGFSDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113
                       7889******************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-24765IPR009057Homeodomain-like
PROSITE profilePS5129419.151062IPR017930Myb domain
SuperFamilySSF466894.93E-3012109IPR009057Homeodomain-like
SMARTSM007172.1E-141464IPR001005SANT/Myb domain
PfamPF002496.2E-171562IPR001005SANT/Myb domain
CDDcd001679.49E-111762No hitNo description
PROSITE profilePS5129425.78563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2566117IPR009057Homeodomain-like
SMARTSM007171.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.1E-1468113IPR001005SANT/Myb domain
CDDcd001675.87E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIXXXXXXXX XXXXXXXXXX HNKHTTPRAN AYRSKPVATY IDNMLKQAGP CSLLLSVGCM  180
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121174108B-MYB
1h8a_C5e-281011722128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154659910.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741341e-147AF474134.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0015521e-147AP001552.1 Oryza sativa Japonica Group geneomic DNA, chromosome 6, PAC clone:P0029D06.
GenBankAP0149621e-147AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY4593421e-147AY459342.1 Oryza sativa (japonica cultivar-group) clone CLC13210-1 R2R3-MYB gene region.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641987.12e-85transcription factor MYB53
SwissprotQ9S9Z25e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0E0A4111e-84A0A0E0A411_9ORYZ; Uncharacterized protein
TrEMBLQ8S3Y41e-85Q8S3Y4_ORYSA; Typical P-type R2R3 Myb protein (Fragment)
STRINGOGLUM06G00580.12e-85(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-67myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]