PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022154-PA | ||||||||
Common Name | OsI_21323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 426aa MW: 46325.6 Da PI: 10.9111 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.8e-27 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s BGIOSGA022154-PA 3 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 52 8*********************************************9986 PP | |||||||
2 | K-box | 44.6 | 6.2e-16 | 289 | 351 | 9 | 71 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 e + ++++ +++ L ei++ + R+++Ge+Les+sl+eL+ Le q+eksl++iR +K BGIOSGA022154-PA 289 PRELTVKNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKAS 351 5566789***************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 1.91E-30 | 1 | 52 | No hit | No description |
PROSITE profile | PS50066 | 26.492 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-28 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-23 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-15 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-15 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-17 | 294 | 390 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.946 | 294 | 400 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MRRIEDTTRR QVTFSKRRKG LLKKASELSV LCDAEVALLV FSPRGRFFHF ASAPSHGYLL 60 VVIKEGQLLA GGGRPVAATL GTAVAAAPGT TVMGTEALGH RQWRGGGRLD DAAVLQATKP 120 GRRRWRCGWQ SMGRAAALRA TAPDTDDGGI VSGGWGGRRR GGRRRQDAGG GGVVGGRWGG 180 WRHSKRRRQD IRGGGVVVND GEDGGAAGDG VRMSAVEAWW ADEGKGGGAA GDGAKMLAME 240 AWWGAAPGRR RWSRGGRMTG RAAPGHRRLE GTIDRYISHT QEAPANKKPR ELTVKNMKSQ 300 SETLAMEIDT VEAYTRKMQG ENLESCSLQE LHGLEMQMEK SLSSIRLQKA SKWSQCAIYV 360 VAVQKKLMDK ISQLQQQEKI LSEENALLLD QGKVQHAPIG APAREMNQNQ HVQDIDVDTE 420 LVIGRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74851 | 1e-119 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116014006 | 1e-119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642540.1 | 9e-96 | MADS-box transcription factor 50-like isoform X1 | ||||
Refseq | XP_015642541.1 | 9e-96 | MADS-box transcription factor 50-like isoform X1 | ||||
TrEMBL | A2Y8E3 | 0.0 | A2Y8E3_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI06G00550.1 | 1e-110 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17434 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 5e-22 | AGAMOUS-like 14 |