PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022154-PA
Common NameOsI_21323
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 426aa    MW: 46325.6 Da    PI: 10.9111
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022154-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.8e-27352251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  BGIOSGA022154-PA  3 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 52
                      8*********************************************9986 PP

2K-box44.66.2e-16289351971
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                         e + ++++ +++ L  ei++ +   R+++Ge+Les+sl+eL+ Le q+eksl++iR +K  
  BGIOSGA022154-PA 289 PRELTVKNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKAS 351
                       5566789***************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002651.91E-30152No hitNo description
PROSITE profilePS5006626.492154IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-28153IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-23154IPR002100Transcription factor, MADS-box
PfamPF003192.9E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-151631IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-153152IPR002100Transcription factor, MADS-box
PfamPF014861.1E-17294390IPR002487Transcription factor, K-box
PROSITE profilePS5129710.946294400IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MRRIEDTTRR QVTFSKRRKG LLKKASELSV LCDAEVALLV FSPRGRFFHF ASAPSHGYLL  60
VVIKEGQLLA GGGRPVAATL GTAVAAAPGT TVMGTEALGH RQWRGGGRLD DAAVLQATKP  120
GRRRWRCGWQ SMGRAAALRA TAPDTDDGGI VSGGWGGRRR GGRRRQDAGG GGVVGGRWGG  180
WRHSKRRRQD IRGGGVVVND GEDGGAAGDG VRMSAVEAWW ADEGKGGGAA GDGAKMLAME  240
AWWGAAPGRR RWSRGGRMTG RAAPGHRRLE GTIDRYISHT QEAPANKKPR ELTVKNMKSQ  300
SETLAMEIDT VEAYTRKMQG ENLESCSLQE LHGLEMQMEK SLSSIRLQKA SKWSQCAIYV  360
VAVQKKLMDK ISQLQQQEKI LSEENALLLD QGKVQHAPIG APAREMNQNQ HVQDIDVDTE  420
LVIGRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.748511e-119leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160140061e-119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642540.19e-96MADS-box transcription factor 50-like isoform X1
RefseqXP_015642541.19e-96MADS-box transcription factor 50-like isoform X1
TrEMBLA2Y8E30.0A2Y8E3_ORYSI; Uncharacterized protein
STRINGORUFI06G00550.11e-110(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174341010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-22AGAMOUS-like 14