PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022010-PA
Common NameOsI_21488
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BBR-BPC
Protein Properties Length: 274aa    MW: 30571.8 Da    PI: 10.4237
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022010-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind71.73e-22199186
         GAGA_bind  1 mdddgsre..rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82
                      md+ g+re  r+++ +y+           +++lk++++++l++++++rd++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+
  BGIOSGA022010-PA  1 MDNLGHREngRQRPdQYKglhtqwmmpqTQRHLKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNALA 95
                      9999999999****9***********74449***************************************************************9 PP

         GAGA_bind 83 alll 86
                      al+ 
  BGIOSGA022010-PA 96 ALES 99
                      9875 PP
2GAGA_bind2792.3e-85103274138301
         GAGA_bind 138 eeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                        ++  +a ++k++kk++++++p+++ +   +k+kk++ ++k+v ++++ ++      +k+e+k+++l+ln+v++D+st+P+P+CsCtG+lrqC
  BGIOSGA022010-PA 103 LNSSRSAGKAKRPKKNSSQASPLKRPSGvlRKTKKPSGDWKNVGMSGCGDDsahasvMKNEWKDQNLGLNQVAFDDSTMPAPACSCTGKLRQC 195
                       5567788999**************999988888889**********99855589999************************************ PP

         GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       YkWGnGGWqS+CCt++iS+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
  BGIOSGA022010-PA 196 YKWGNGGWQSSCCTMNISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 274
                       ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.4E-1561274IPR010409GAGA-binding transcriptional activator
PfamPF062171.3E-851274IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDQYKGL HTQWMMPQTQ RHLKDHQSMN LLALMNDRDN AIRERDHALA  60
EKKAAIAERD MAFTQRDAAM AERNAAVVER DNALAALESI PYLNSSRSAG KAKRPKKNSS  120
QASPLKRPSG VLRKTKKPSG DWKNVGMSGC GDDSAHASVM KNEWKDQNLG LNQVAFDDST  180
MPAPACSCTG KLRQCYKWGN GGWQSSCCTM NISMYPLPVM PNKRHARMGG RKMSGGAFTK  240
LLSRLAAEGH DLSTPVDLKD HWAKHGTNRY ITIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.105750.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329806400.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706160.0AK070616.1 Oryza sativa Japonica Group cDNA clone:J023060O20, full insert sequence.
GenBankAP0005590.0AP000559.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0493C11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY9575040.0AY957504.1 Oryza sativa (japonica cultivar-group) barley B recombinant-like protein D gene, complete cds.
GenBankAY9575050.0AY957505.1 Oryza sativa (japonica cultivar-group) barley B recombinant-like protein D mRNA, complete cds.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964426.11e-167barley B recombinant-like protein D
RefseqXP_004964427.11e-167barley B recombinant-like protein D
SwissprotQ5VSA81e-168BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA2Y8V80.0A2Y8V8_ORYSI; Uncharacterized protein
STRINGOS06T0130600-011e-166(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.27e-90basic pentacysteine 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]