PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021814-PA
Common NameOsI_21859
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 333aa    MW: 36303.9 Da    PI: 4.3389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021814-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12121166247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WTteE+ +++++ + +G g+Wk+I+  +   +t+ q+ s+ qky
  BGIOSGA021814-PA 121 RFWTTEEHRQFLRGLRVYGRGDWKSISMNFVRSKTPVQVSSHAQKY 166
                       56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.028115171IPR017930Myb domain
SuperFamilySSF466891.27E-15117172IPR009057Homeodomain-like
SMARTSM007171.9E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-9120168IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-14120169IPR006447Myb domain, plants
PfamPF002496.4E-9123166IPR001005SANT/Myb domain
CDDcd001672.23E-9123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAEEPAAAQP QYFDAGAVVD PTFDFFIDHN NFLGMPPPPV QQADDHAMNN VVADASMNYF  60
YGGGAMVFGG GAPMGETVEQ AAPPVPAPVA VAPVVMNRDD DEVNNQGGRR HRAAPTNTTR  120
RFWTTEEHRQ FLRGLRVYGR GDWKSISMNF VRSKTPVQVS SHAQKYFRRV ESAAADKQRY  180
SINDVGLNDD DDDDAAAMDG TNSYSNNNFG GWQSLAFAGG HLEPVSGGGA AGQVIAPASS  240
SAAAMNSAAQ FWAPMLFNPQ IQQQFMQMQA QTQQAWNDQH MMMAAAPMEG ATDTNFEPAG  300
AANYYYQQQQ QEEGGAYGVP ADQWMMNQNN NMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882004.15e-99transcription factor DIVARICATA
TrEMBLA2Y9V50.0A2Y9V5_ORYSI; Uncharacterized protein
STRINGONIVA06G15070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-22MYB family protein