PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021743-PA
Common NameOsI_21996
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 477aa    MW: 50632.6 Da    PI: 4.9153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021743-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11326371555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  BGIOSGA021743-PA 326 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 371
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.93E-13319375No hitNo description
SuperFamilySSF474593.93E-17319381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-17323380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF  120
DAKLDTPGLA ELPHALSSSI DSNGSDISAF LADVHAVSSA PTLCSAFQNV SSFMEPVNLD  180
AFGFQGAQNV AMLNKTSLPN GNPSLFDNAA IASLHDSKEF LNGGSIPSFG TVLQALGAGG  240
LKAAQQEQNI RNIPLPTFTS GSHLAVTDAQ GPPLPSKIPP LIHDHNSEYP INHSSDVEPQ  300
ANSAPGNSAN AKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML  360
DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNPSLSASTI SQGPTDMPDS  420
EDSSAFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAAA AAIPPEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87900.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329756850.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA2YA830.0A2YA83_ORYSI; Uncharacterized protein
STRINGONIVA06G06960.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-57LJRHL1-like 3