PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021526-PA
Common NameOsI_22395
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 756aa    MW: 81402.4 Da    PI: 7.7523
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021526-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.23.1e-072643118
          zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                      CG+H Cq +CH+GpC++C
  BGIOSGA021526-PA 26 CGNHACQDICHPGPCGEC 43
                      ****************** PP
2zf-NF-X123.31.4e-0784101118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C+ +CHeG+CppC
  BGIOSGA021526-PA  84 CGVHRCKVTCHEGDCPPC 101
                       ****************** PP
3zf-NF-X1171.3e-05179197119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H Cq lCH G CppC 
  BGIOSGA021526-PA 179 CGQHGCQLLCHSGHCPPCL 197
                       ******************6 PP
4zf-NF-X119.32.4e-06289305117
          zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                       CG+H C++ CH+ pC+p
  BGIOSGA021526-PA 289 CGMHACNRSCHPSPCDP 305
                       ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.10E-81659No hitNo description
PfamPF014228.1E-52643IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-42645IPR000967Zinc finger, NF-X1-type
CDDcd060085.45E-1474122No hitNo description
PfamPF014223.6E-684101IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00184103IPR000967Zinc finger, NF-X1-type
CDDcd060086.44E-9169221No hitNo description
PfamPF014220.0011179196IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2E-4179198IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-4226274No hitNo description
PfamPF01422140236252IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62236254IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016289305IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029289324IPR000967Zinc finger, NF-X1-type
PfamPF014225.9326352IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16333354IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MELKGNLSEK DGVFSCSEAC SHMLSCGNHA CQDICHPGPC GECELMPGKV TACHCGKTRL  60
LEKRASCLDP IPTCDKVCDK KLPCGVHRCK VTCHEGDCPP CVVRVEQRCR CGSSGQMVEC  120
YKVLEEEFRC NKPCGRKKNC GRHRCSECCC PLSKPLARLE GGNWDPHLCQ IPCGKKLRCG  180
QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG TPTPSCPHQC LVPQPCGHPA  240
THQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN QPCGKNRQCG MHACNRSCHP  300
SPCDPPPANG DASSSTGGRA SCGQVCGAPR RECKHTCTAP CHPSSPCPDL RCEFPMTIAC  360
SCGRITATVP CGAGGTANGD NMFEVSIIQK LPMPLQPVES DGRRVPLGQR KLSCDEDCAK  420
MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE PKWVMAIEER CKFLVLGKTR  480
GNSSGNLKVH VFCHMTKDKR DAIRVIADRW KLSVQAAGWE PKRFITIHPT PKSKAPARIL  540
GSKPGVFVAA SHPFFDPLVD MDPRLVVAML DLPRDADVSA LVLRFGGECE LVWLNDKNAV  600
AVFNDPARAA TALRRLDYGS AYQGAAVFLP SSSAQPGNVW VAGQKDGVAA TKSSANPWKK  660
ATASEPDPSS GDWTGVLGQA PGSVWRRGGD TVAQVMGTSN RWNALESDAA TSSRPVEESK  720
PAPRTDAVSS AGPSTAPPVS KMQPEVEVDD WEEACE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.176650.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO293675300.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLB8B0A00.0B8B0A0_ORYSI; Uncharacterized protein
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1