PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA021487-PA

Common Name

OsI_22461

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 464aa MW: 50213.7 Da PI: 6.8717

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA021487-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	172	211	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k +rr+++NReAAr+sR RKka+i++Le +L + BGIOSGA021487-PA 172 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQ 211 589**************************97777765554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-7	169	268	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	171	215	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	173	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.2E-8	173	217	No hit	No description
CDD	cd14708	1.06E-20	173	225	No hit	No description
SuperFamily	SSF57959	1.63E-7	173	216	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-30	258	334	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MGVFEEKGIK EIGEIGKIRK TSACRLATSF VLDHDAMLGC PNPSSKSSSN LTAGGHLPPL 60 AVAAAAAAAQ QHGVAVVGMA AHQGMAAATA ADRFCLPRMA AAAAAASQVE NWGDSGVIVS 120 SPFTDDTSTD LDDSADKHHL HALVGGGDGG DDAGEQRGAD SSAVSKERRG DQKMQRRLAQ 180 NREAARKSRM RKKAYIQQLE SSRSKLMHLE QELQRARQQG IFIATGGSGD HGHSIGGNGG 240 TLAFDLEYAR WLDEHQRHIN DLRVALNAQM SDDELCELVD AVMMHYDQVF RLKSFATKSD 300 VFHVLSGMWM SPAERFFMWL GGFRSSELLK VLASHLEPLT DQQLMGICNL QQSSQQAEDA 360 LSQGMEALQQ TLGDTLVSAA ATVVSGGGGA DNVTNYMGQM AIAMAKLTTL ENFLRQADLL 420 RHQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MGVFEEKGIK EIGEIGKIRK TSACRLATSF VLDHDAMLGC PNPSSKSSSN LTAGGHLPPL  60
AVAAAAAAAQ QHGVAVVGMA AHQGMAAATA ADRFCLPRMA AAAAAASQVE NWGDSGVIVS  120
SPFTDDTSTD LDDSADKHHL HALVGGGDGG DDAGEQRGAD SSAVSKERRG DQKMQRRLAQ  180
NREAARKSRM RKKAYIQQLE SSRSKLMHLE QELQRARQQG IFIATGGSGD HGHSIGGNGG  240
TLAFDLEYAR WLDEHQRHIN DLRVALNAQM SDDELCELVD AVMMHYDQVF RLKSFATKSD  300
VFHVLSGMWM SPAERFFMWL GGFRSSELLK VLASHLEPLT DQQLMGICNL QQSSQQAEDA  360
LSQGMEALQQ TLGDTLVSAA ATVVSGGGGA DNVTNYMGQM AIAMAKLTTL ENFLRQADLL  420
RHQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.56267	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32994928	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109719	0.0	AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642107.1	0.0	transcription factor TGAL3-like isoform X1
Swissprot	Q5Z6N9	0.0	TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBL	A2YBH9	0.0	A2YBH9_ORYSI; Uncharacterized protein
STRING	ORUFI06G10660.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-118	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]